4BPX
Crystal structure of human primase in complex with the primase- binding motif of DNA polymerase alpha
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
A | 0003896 | molecular_function | DNA primase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005658 | cellular_component | alpha DNA polymerase:primase complex |
A | 0006260 | biological_process | DNA replication |
A | 0006269 | biological_process | DNA replication, synthesis of primer |
A | 0006270 | biological_process | DNA replication initiation |
A | 0008270 | molecular_function | zinc ion binding |
A | 0016020 | cellular_component | membrane |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0032553 | molecular_function | ribonucleotide binding |
A | 0046872 | molecular_function | metal ion binding |
A | 1990077 | cellular_component | primosome complex |
B | 0006269 | biological_process | DNA replication, synthesis of primer |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
C | 0003896 | molecular_function | DNA primase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005654 | cellular_component | nucleoplasm |
C | 0005658 | cellular_component | alpha DNA polymerase:primase complex |
C | 0006260 | biological_process | DNA replication |
C | 0006269 | biological_process | DNA replication, synthesis of primer |
C | 0006270 | biological_process | DNA replication initiation |
C | 0008270 | molecular_function | zinc ion binding |
C | 0016020 | cellular_component | membrane |
C | 0016779 | molecular_function | nucleotidyltransferase activity |
C | 0032553 | molecular_function | ribonucleotide binding |
C | 0046872 | molecular_function | metal ion binding |
C | 1990077 | cellular_component | primosome complex |
D | 0006269 | biological_process | DNA replication, synthesis of primer |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 430 |
Chain | Residue |
A | CYS121 |
A | CYS122 |
A | CYS128 |
A | CYS131 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 430 |
Chain | Residue |
C | CYS121 |
C | CYS122 |
C | CYS128 |
C | CYS131 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: ACT_SITE => ECO:0000255 |
Chain | Residue | Details |
A | GLU44 | |
A | ASP109 | |
A | ASP111 | |
C | GLU44 | |
C | ASP109 | |
C | ASP111 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31479243, ECO:0007744|PDB:6R4S |
Chain | Residue | Details |
A | ASP109 | |
A | ASP111 | |
A | ASP306 | |
C | ASP109 | |
C | ASP111 | |
C | ASP306 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24043831, ECO:0000269|PubMed:25550159, ECO:0000269|PubMed:26975377, ECO:0000269|PubMed:31479243 |
Chain | Residue | Details |
A | CYS121 | |
A | CYS122 | |
A | CYS128 | |
A | CYS131 | |
C | CYS121 | |
C | CYS122 | |
C | CYS128 | |
C | CYS131 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24043831, ECO:0000269|PubMed:24239947, ECO:0000269|PubMed:31479243 |
Chain | Residue | Details |
A | SER160 | |
C | SER160 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24043831, ECO:0000269|PubMed:31479243 |
Chain | Residue | Details |
A | HIS315 | |
C | HIS315 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31479243 |
Chain | Residue | Details |
A | HIS324 | |
C | HIS324 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22223895 |
Chain | Residue | Details |
A | MET1 | |
C | MET1 |