Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4BLW

Crystal structure of Escherichia coli 23S rRNA (A2030-N6)- methyltransferase RlmJ in complex with S-adenosylhomocysteine (AdoHcy) and Adenosine monophosphate (AMP)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0008649molecular_functionrRNA methyltransferase activity
A0008988molecular_functionrRNA (adenine-N6-)-methyltransferase activity
A0015976biological_processcarbon utilization
A0016740molecular_functiontransferase activity
A0032259biological_processmethylation
A0036307molecular_function23S rRNA (adenine(2030)-N(6))-methyltransferase activity
A0070475biological_processrRNA base methylation
B0003676molecular_functionnucleic acid binding
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0006364biological_processrRNA processing
B0008168molecular_functionmethyltransferase activity
B0008649molecular_functionrRNA methyltransferase activity
B0008988molecular_functionrRNA (adenine-N6-)-methyltransferase activity
B0015976biological_processcarbon utilization
B0016740molecular_functiontransferase activity
B0032259biological_processmethylation
B0036307molecular_function23S rRNA (adenine(2030)-N(6))-methyltransferase activity
B0070475biological_processrRNA base methylation
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE AMP A 1281
ChainResidue
ATYR4
AHOH2201
AHOH2202
AHIS9
AASN12
AGLU60
AVAL199
AMET235
ANA1294
AHOH2015
AHOH2128

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE SAH A 1282
ChainResidue
ALEU2
ATYR4
ALYS18
AHIS19
ATHR41
AHIS42
AALA43
AGLY44
AGLY99
ASER100
AGLU118
ALEU119
AHIS120
AALA142
AASP143
AGLY144
AASP164
AHOH2003
AHOH2006
AHOH2009
AHOH2041
AHOH2042

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GOL A 1283
ChainResidue
AALA66
AARG67
ALYS185
AARG186
APHE187
AALA188
AEDO1285
AHOH2060
AHOH2061
AHOH2146
AHOH2149
AHOH2150
AHOH2204

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1284
ChainResidue
AVAL155
ASER156
AARG157
AHOH2205
BGLU110
BGLN111

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1285
ChainResidue
AARG67
APRO266
AGOL1283
AHOH2147
AHOH2192

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1286
ChainResidue
AHIS13
AGLU60
AGLU63
AHOH2016
AHOH2055
AHOH2056

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1287
ChainResidue
ALEU106
BARG90

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO A 1288
ChainResidue
ASER7
APHE8
AHIS9
AALA10
ALEU50
AALA55
ATHR58
AGLY59
AGLU60
ATYR61

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1289
ChainResidue
APRO228
ATHR269
AGLY270

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1290
ChainResidue
APRO266
AALA267

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1291
ChainResidue
ALYS30
ALEU106
ALEU107
ALEU108
AHOH2206
AHOH2207

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 1292
ChainResidue
ALEU39
AGLN115
ALEU116
ATHR117
AARG138
AGLU140
AGLN147
ALYS151
AHOH2039

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1293
ChainResidue
AARG47
AGLU130
ASO41295
AHOH2107

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NA A 1294
ChainResidue
ATYR4
APRO165
APRO166
ATRP195
AAMP1281
AHOH2019
AHOH2126
AHOH2128

site_idBC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AMP B 1280
ChainResidue
BTYR4
BHIS9
BASN12
BGLU60
BVAL199
BMET235
BEDO1283
BNA1287
BHOH2009
BHOH2013
BHOH2078
BHOH2080
BHOH2115

site_idBC7
Number of Residues22
DetailsBINDING SITE FOR RESIDUE SAH B 1281
ChainResidue
BTYR4
BHIS6
BLYS18
BHIS19
BTHR41
BHIS42
BALA43
BGLY99
BSER100
BGLU118
BLEU119
BHIS120
BALA142
BASP143
BGLY144
BASP164
BEDO1284
BHOH2001
BHOH2005
BHOH2007
BHOH2028
BHOH2029

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1282
ChainResidue
BLEU29
BLYS32
BARG158
BHOH2076

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 1283
ChainResidue
BTYR4
BARG5
BPHE8
BHIS9
BAMP1280

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 1284
ChainResidue
BPRO166
BTYR167
BGLU168
BMET169
BASP172
BSAH1281
BHOH2028
BHOH2083

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1286
ChainResidue
BALA66
BARG67
BHOH2042
BHOH2044
BHOH2094
BHOH2096

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO B 1285
ChainResidue
AARG105
ALYS133
AHOH2109
BHIS87
BPHE88
BASN89
BARG90
BSER91
BHOH2055

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1288
ChainResidue
AGLU110
AHOH2096
BTRP69
BLYS86
BASN89
BARG90

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NA B 1287
ChainResidue
BTYR4
BPRO165
BPRO166
BTRP195
BAMP1280
BHOH2013
BHOH2077
BHOH2078

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1295
ChainResidue
AHIS87
AEDO1293
AHOH2047
AHOH2094
AHOH2208
BHIS87

Functional Information from PROSITE/UniProt
site_idPS00092
Number of Residues7
DetailsN6_MTASE N-6 Adenine-specific DNA methylases signature. ILIDPPY
ChainResidueDetails
AILE161-TYR167
AILE241-TRP247

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"23945937","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23945937","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Interaction with substrate rRNA","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon