| Chain | GOid | namespace | contents |
| B | 0000118 | cellular_component | histone deacetylase complex |
| B | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| B | 0000785 | cellular_component | chromatin |
| B | 0000792 | cellular_component | heterochromatin |
| B | 0000976 | molecular_function | transcription cis-regulatory region binding |
| B | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| B | 0000979 | molecular_function | RNA polymerase II core promoter sequence-specific DNA binding |
| B | 0001046 | molecular_function | core promoter sequence-specific DNA binding |
| B | 0001222 | molecular_function | transcription corepressor binding |
| B | 0002039 | molecular_function | p53 binding |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003682 | molecular_function | chromatin binding |
| B | 0003714 | molecular_function | transcription corepressor activity |
| B | 0004407 | molecular_function | histone deacetylase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005667 | cellular_component | transcription regulator complex |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006338 | biological_process | chromatin remodeling |
| B | 0006346 | biological_process | DNA methylation-dependent constitutive heterochromatin formation |
| B | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| B | 0007492 | biological_process | endoderm development |
| B | 0007623 | biological_process | circadian rhythm |
| B | 0008284 | biological_process | positive regulation of cell population proliferation |
| B | 0009913 | biological_process | epidermal cell differentiation |
| B | 0010628 | biological_process | positive regulation of gene expression |
| B | 0010629 | biological_process | negative regulation of gene expression |
| B | 0010832 | biological_process | negative regulation of myotube differentiation |
| B | 0016581 | cellular_component | NuRD complex |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
| B | 0017053 | cellular_component | transcription repressor complex |
| B | 0019899 | molecular_function | enzyme binding |
| B | 0021766 | biological_process | hippocampus development |
| B | 0030182 | biological_process | neuron differentiation |
| B | 0030336 | biological_process | negative regulation of cell migration |
| B | 0030512 | biological_process | negative regulation of transforming growth factor beta receptor signaling pathway |
| B | 0031492 | molecular_function | nucleosomal DNA binding |
| B | 0031507 | biological_process | heterochromatin formation |
| B | 0032922 | biological_process | circadian regulation of gene expression |
| B | 0032991 | cellular_component | protein-containing complex |
| B | 0033148 | biological_process | positive regulation of intracellular estrogen receptor signaling pathway |
| B | 0033558 | molecular_function | protein lysine deacetylase activity |
| B | 0035851 | molecular_function | Krueppel-associated box domain binding |
| B | 0036120 | biological_process | cellular response to platelet-derived growth factor stimulus |
| B | 0042475 | biological_process | odontogenesis of dentin-containing tooth |
| B | 0042659 | biological_process | regulation of cell fate specification |
| B | 0042733 | biological_process | embryonic digit morphogenesis |
| B | 0042826 | molecular_function | histone deacetylase binding |
| B | 0043025 | cellular_component | neuronal cell body |
| B | 0043066 | biological_process | negative regulation of apoptotic process |
| B | 0043124 | biological_process | negative regulation of canonical NF-kappaB signal transduction |
| B | 0043922 | biological_process | host-mediated suppression of viral transcription |
| B | 0045814 | biological_process | negative regulation of gene expression, epigenetic |
| B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| B | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| B | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0048511 | biological_process | rhythmic process |
| B | 0048661 | biological_process | positive regulation of smooth muscle cell proliferation |
| B | 0048709 | biological_process | oligodendrocyte differentiation |
| B | 0048714 | biological_process | positive regulation of oligodendrocyte differentiation |
| B | 0051059 | molecular_function | NF-kappaB binding |
| B | 0060766 | biological_process | negative regulation of androgen receptor signaling pathway |
| B | 0060789 | biological_process | hair follicle placode formation |
| B | 0061029 | biological_process | eyelid development in camera-type eye |
| B | 0061198 | biological_process | fungiform papilla formation |
| B | 0061629 | molecular_function | RNA polymerase II-specific DNA-binding transcription factor binding |
| B | 0070822 | cellular_component | Sin3-type complex |
| B | 0070888 | molecular_function | E-box binding |
| B | 0090090 | biological_process | negative regulation of canonical Wnt signaling pathway |
| B | 0140297 | molecular_function | DNA-binding transcription factor binding |
| B | 0141221 | molecular_function | histone deacetylase activity, hydrolytic mechanism |
| B | 0160008 | molecular_function | protein decrotonylase activity |
| B | 0160009 | molecular_function | histone decrotonylase activity |
| B | 0160216 | molecular_function | protein lysine delactylase activity |
| B | 1902455 | biological_process | negative regulation of stem cell population maintenance |
| B | 1902459 | biological_process | positive regulation of stem cell population maintenance |
| B | 1990841 | molecular_function | promoter-specific chromatin binding |
| B | 2000736 | biological_process | regulation of stem cell differentiation |
| B | 2001243 | biological_process | negative regulation of intrinsic apoptotic signaling pathway |
