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4B52

Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AHIS135
AHIS139
AGLU159
ARDF501

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 402
ChainResidue
AHOH2170
AHOH2193
AASP129
AASP131
AGLN170
AASP178
AASP179

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 403
ChainResidue
AASP53
AASP55
AVAL57
AHOH2099
AHOH2101
BHOH2038

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 404
ChainResidue
ATYR181
ATHR182
AILE185
AASP188
AHOH2201
AHOH2203

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE RDF A 501
ChainResidue
AASN104
AASN105
AALA106
APHE123
AHIS135
AGLU136
AHIS139
AGLU159
ALEU190
AARG191
AHIS219
AZN401
AHOH2159
AHOH2314
AHOH2315
BASN215

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BHIS135
BHIS139
BGLU159
BRDF501

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 402
ChainResidue
BASP129
BASP131
BGLN170
BASP178
BHOH2155
BHOH2179

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 403
ChainResidue
BASP53
BASP55
BVAL57
BHOH2083
BHOH2084
BHOH2088

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 404
ChainResidue
BTYR181
BTHR182
BILE185
BASP188
BHOH2187
BHOH2191

site_idBC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE RDF B 501
ChainResidue
ATYR151
AASN215
AHOH2183
AHOH2247
BASN104
BASN105
BALA106
BPHE123
BPHE126
BHIS135
BGLU136
BHIS139
BGLU159
BLEU190
BARG191
BHIS219
BZN401
BHOH2274

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1305
ChainResidue
AASN109
AHOH2161
AHOH2162
AHOH2316
BGLU149

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VVGHELTHGV
ChainResidueDetails
AVAL132-VAL141

238895

PDB entries from 2025-07-16

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