Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ZNP

IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN

Functional Information from GO Data
ChainGOidnamespacecontents
A0003884molecular_functionD-amino-acid oxidase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005741cellular_componentmitochondrial outer membrane
A0005777cellular_componentperoxisome
A0005782cellular_componentperoxisomal matrix
A0005829cellular_componentcytosol
A0006562biological_processproline catabolic process
A0007586biological_processdigestion
A0016491molecular_functionoxidoreductase activity
A0019478biological_processD-amino acid catabolic process
A0036088biological_processD-serine catabolic process
A0042416biological_processdopamine biosynthetic process
A0042802molecular_functionidentical protein binding
A0042995cellular_componentcell projection
A0045202cellular_componentsynapse
A0046416biological_processD-amino acid metabolic process
A0048786cellular_componentpresynaptic active zone
A0055130biological_processD-alanine catabolic process
A0070178biological_processD-serine metabolic process
A0070945biological_processneutrophil-mediated killing of gram-negative bacterium
A0071949molecular_functionFAD binding
B0003884molecular_functionD-amino-acid oxidase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0005741cellular_componentmitochondrial outer membrane
B0005777cellular_componentperoxisome
B0005782cellular_componentperoxisomal matrix
B0005829cellular_componentcytosol
B0006562biological_processproline catabolic process
B0007586biological_processdigestion
B0016491molecular_functionoxidoreductase activity
B0019478biological_processD-amino acid catabolic process
B0036088biological_processD-serine catabolic process
B0042416biological_processdopamine biosynthetic process
B0042802molecular_functionidentical protein binding
B0042995cellular_componentcell projection
B0045202cellular_componentsynapse
B0046416biological_processD-amino acid metabolic process
B0048786cellular_componentpresynaptic active zone
B0055130biological_processD-alanine catabolic process
B0070178biological_processD-serine metabolic process
B0070945biological_processneutrophil-mediated killing of gram-negative bacterium
B0071949molecular_functionFAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues33
DetailsBINDING SITE FOR RESIDUE FAD A 350
ChainResidue
AILE6
ATHR43
ATHR44
ATHR45
AALA48
AGLY50
ALEU51
AARG162
AVAL164
ACYS181
ATHR182
AGLY7
AGLY183
ATRP185
AGLY281
AARG283
AGLY312
AGLY313
ATYR314
AGLY315
ALEU316
ATHR317
AALA8
ASE2360
AHOH2018
AHOH2021
AHOH2060
AGLY9
AVAL10
AILE11
AALA36
AASP37
AARG38

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SE2 A 360
ChainResidue
ALEU51
ALEU215
ATYR224
ATYR228
AILE230
AARG283
AGLY313
AFAD350

site_idAC3
Number of Residues33
DetailsBINDING SITE FOR RESIDUE FAD B 350
ChainResidue
BGLY7
BALA8
BGLY9
BVAL10
BILE11
BALA36
BASP37
BARG38
BTHR43
BTHR44
BTHR45
BALA48
BALA49
BGLY50
BLEU51
BARG162
BLYS163
BVAL164
BCYS181
BTHR182
BGLY183
BTRP185
BILE202
BGLY281
BARG283
BPRO284
BGLY312
BGLY313
BTYR314
BGLY315
BLEU316
BTHR317
BHOH2015

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 1341
ChainResidue
BSER25
BVAL26

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1341
ChainResidue
AASP31
AGLY156
ALYS158

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1342
ChainResidue
AGLU292
AARG293

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1342
ChainResidue
AASN143
BARG274
BILE275
BILE276

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 1343
ChainResidue
BGLN243
BLEU244

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL A 1343
ChainResidue
AGLU154

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1344
ChainResidue
ALEU56
AHIS217
AASP218
APRO219
AILE223
AHOH2034

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues11
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. Pg.TQtVTLGGI
ChainResidueDetails
APRO231-ILE241

site_idPS00677
Number of Residues19
DetailsDAO D-amino acid oxidases signature. VIHNYGhGGyGltihwGcA
ChainResidueDetails
AVAL305-ALA323

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJ9, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:6KBP, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
AALA8
AILE11
BALA8
BILE11

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17303072, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82
ChainResidueDetails
AGLY9
BGLY9

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNQ
ChainResidueDetails
AVAL10
BVAL10

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
AASP37
BASP37

site_idSWS_FT_FI5
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJ9, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:6KBP, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
AARG38
BVAL164
BGLY312
BTHR317
ATHR45
ALEU51
AVAL164
AGLY312
ATHR317
BARG38
BTHR45
BLEU51

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:18455394, ECO:0007744|PDB:3CUK
ChainResidueDetails
ATHR43
BTHR43

site_idSWS_FT_FI7
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJ9, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
ATHR44
BTHR44

site_idSWS_FT_FI8
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P00371
ChainResidueDetails
AALA49
ALYS163
BALA49
BLYS163

site_idSWS_FT_FI9
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:6KBP, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
AGLY50
BGLY50

site_idSWS_FT_FI10
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17303072, ECO:0007744|PDB:2E82
ChainResidueDetails
AGLN53
BGLN53

site_idSWS_FT_FI11
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:3ZNQ
ChainResidueDetails
ATHR182
BTHR182

site_idSWS_FT_FI12
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:17303072, ECO:0007744|PDB:2E4A
ChainResidueDetails
ATYR224
BTYR224

site_idSWS_FT_FI13
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:17088322, ECO:0000305|PubMed:17303072, ECO:0000305|PubMed:18455394, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:3CUK
ChainResidueDetails
ATYR228
BTYR228

site_idSWS_FT_FI14
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNO
ChainResidueDetails
AARG283
BARG283

site_idSWS_FT_FI15
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFD
ChainResidueDetails
AGLY313
BGLY313

site_idSWS_FT_FI16
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0000269|PubMed:38035964, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:5ZJ9, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:6KBP, ECO:0007744|PDB:7U9S, ECO:0007744|PDB:7U9U, ECO:0007744|PDB:8HY5
ChainResidueDetails
AGLY315
BGLY315

site_idSWS_FT_FI17
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17088322, ECO:0000269|PubMed:17303072, ECO:0000269|PubMed:18455394, ECO:0000269|PubMed:19438227, ECO:0000269|PubMed:23566269, ECO:0000269|PubMed:23631755, ECO:0000269|PubMed:25001371, ECO:0000269|PubMed:30265959, ECO:0000269|PubMed:32730563, ECO:0000269|PubMed:35482677, ECO:0007744|PDB:2DU8, ECO:0007744|PDB:2E48, ECO:0007744|PDB:2E49, ECO:0007744|PDB:2E4A, ECO:0007744|PDB:2E82, ECO:0007744|PDB:3CUK, ECO:0007744|PDB:3G3E, ECO:0007744|PDB:3W4I, ECO:0007744|PDB:3W4J, ECO:0007744|PDB:3W4K, ECO:0007744|PDB:3ZNN, ECO:0007744|PDB:3ZNO, ECO:0007744|PDB:3ZNP, ECO:0007744|PDB:3ZNQ, ECO:0007744|PDB:4QFC, ECO:0007744|PDB:4QFD, ECO:0007744|PDB:5ZJ9, ECO:0007744|PDB:5ZJA, ECO:0007744|PDB:6KBP, ECO:0007744|PDB:7U9U
ChainResidueDetails
ALEU316
BLEU316

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon