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3WXG

Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004843molecular_functioncysteine-type deubiquitinase activity
A0016579biological_processprotein deubiquitination
D0004843molecular_functioncysteine-type deubiquitinase activity
D0016579biological_processprotein deubiquitination
Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52
CLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
FARG54
FARG72
CARG54
CARG72

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for function
ChainResidueDetails
FHIS68
CHIS68

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
FSER65
CSER65

site_idSWS_FT_FI4
Number of Residues16
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
EGLY76
CLYS27
CLYS29
CLYS33
CLYS48
CLYS63
FLYS6
FLYS11
FLYS27
FLYS29
FLYS33
FLYS48
FLYS63
CLYS11
CLYS6

site_idSWS_FT_FI5
Number of Residues14
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
BLYS27
BLYS29
BLYS33
BLYS48
BARG63
ELYS6
ELYS11
ELYS27
ELYS29
ELYS33
ELYS48
EARG63
BLYS11
BLYS6

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
BGLY76
EGLY76

218500

PDB entries from 2024-04-17

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