Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3WA3

Crystal structure of copper amine oxidase from arthrobacter globiformis in N2 condition

Functional Information from GO Data
ChainGOidnamespacecontents
A0005507molecular_functioncopper ion binding
A0008131molecular_functionprimary amine oxidase activity
A0009308biological_processamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0048038molecular_functionquinone binding
A0052595molecular_functionaliphatic amine oxidase activity
B0005507molecular_functioncopper ion binding
B0008131molecular_functionprimary amine oxidase activity
B0009308biological_processamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0048038molecular_functionquinone binding
B0052595molecular_functionaliphatic amine oxidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A 1001
ChainResidue
AHIS431
AHIS433
AHIS592
AHOH1451
AHOH1453

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1002
ChainResidue
AHOH1108
AASP440
AMET441
AASP581
AILE582

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGE A 1003
ChainResidue
ATHR192
AVAL194
APHE195
AGLU413
APEG1019
AHOH1864

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGE A 1004
ChainResidue
AGLU208
AHOH1875
AHOH1900

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGE A 1005
ChainResidue
ASER416
AASP417
ASER471
AARG472
AEDO1015
AHOH1223
AHOH1310

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PG4 A 1006
ChainResidue
AASN126
AASP128
AHOH1701
AHOH1775
AHOH1777
BASP161
BVAL197
BPRO198
BALA199
BHOH1391

site_idAC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PG4 A 1007
ChainResidue
APHE105
AALA135
ATRP168
ATYR296
ATYR302
AASP357
ALEU358
ATRP359
AGLY380
AASN381
ATPQ382
APHE407
APEG1017
AHOH1659

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE 1PE A 1008
ChainResidue
AILE190
AASP191
AGLY193
AEDO1012
AEDO1016
AHOH1531
AHOH1613
AHOH1705

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 1009
ChainResidue
ATYR41
AGLY43
AVAL44
ALEU45
AARG61
AARG551
ATYR552
APEG1022
AHOH1205

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1010
ChainResidue
AGLY414
ASER416
AASP417
AHOH1172

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1011
ChainResidue
APRO287
AGLY463
AGLU465
AHOH1495
AHOH1850

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1012
ChainResidue
AARG188
A1PE1008

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1013
ChainResidue
ATHR205
AASN363
AARG366
AHOH1210
AHOH1681
AHOH1727

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1014
ChainResidue
AGLY43
AVAL44
APHE249
AASP250
AHOH1266
AHOH1293
AHOH1485

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1015
ChainResidue
ASER471
AARG472
APGE1005
AHOH1891

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1016
ChainResidue
AARG117
AARG188
AVAL189
A1PE1008

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG A 1017
ChainResidue
APHE105
APRO136
ATYR307
ATHR378
AILE379
AGLY380
APG41007
AHOH1617

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 1018
ChainResidue
AGLU486
AASP488
AARG493
AHOH1751
AHOH1797

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 1019
ChainResidue
APHE195
APRO196
APRO412
AGLU413
APGE1003
AHOH1211
AHOH1227

site_idCC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG A 1020
ChainResidue
AHIS592
APHE593
AARG595
AASP598
AASP605
AARG612
AHOH1244
AHOH1671
AHOH1845

site_idCC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG A 1021
ChainResidue
ATRP349
ATRP349
AGLY350
AARG370
ATYR389
AGLU399
ALYS401
AHOH1185
AHOH1259
AHOH1662

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 1022
ChainResidue
AARG274
AASP548
AARG551
ATYR552
AEDO1009
AHOH1677
AHOH1711

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE HDZ A 1023
ChainResidue
AALA487
AARG490
AHOH1159
AHOH1702

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CU B 1001
ChainResidue
BHIS431
BHIS433
BHIS592
BEDO1017
BHOH1479
BHOH1703

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 1002
ChainResidue
BASP440
BMET441
BASP581
BILE582
BHOH1116

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE B 1003
ChainResidue
BTHR192
BVAL194
BPHE195
BGLU413
BPEG1024

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE B 1004
ChainResidue
BGLU208
BGLY211
BARG619
BHOH1691
BHOH1764

site_idDC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PGE B 1005
ChainResidue
BGLU253
BARG274
BARG438
BTYR546
BASP548
BARG551
BTYR552
BEDO1014
BHOH1200
BHOH1281
BHOH1339
BHOH1711

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PG4 B 1006
ChainResidue
AASP161
AVAL197
AALA199
AHOH1435
AHOH1443
BASP128
BHOH1445

site_idDC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PG4 B 1007
ChainResidue
BPHE105
BALA135
BLEU137
BTRP168
BTRP359
BGLY380
BASN381
BTPQ382
BPHE407
BPEG1019
BHOH1407
BHOH1769

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE B 1008
ChainResidue
BVAL189
BASP191
BTHR192
BEDO1009
BHOH1389
BHOH1707

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1009
ChainResidue
BARG117
BARG188
BVAL189
B1PE1008
BHOH1621
BHOH1683

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 1010
ChainResidue
BASP417
BSER471
BHOH1941

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 1011
ChainResidue
BALA15
BGLY43
BVAL44
BPHE249
BASP250
BHOH1242
BHOH1552

site_idDC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 1012
ChainResidue
BTHR205
BASN363
BTYR364
BARG366
BHOH1704
BHOH1727
BHOH1885

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 1013
ChainResidue
BGLN458
BTHR459
BPRO462
BGLY463
BHOH1659

site_idEC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 1014
ChainResidue
BTYR41
BVAL44
BLEU45
BARG61
BARG551
BTYR552
BPGE1005
BHOH1123

site_idEC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO B 1015
ChainResidue
BTRP349
BILE351
BASN368
BASP393
BVAL604
BPEG1021
BHOH1221
BHOH1657
BHOH1767

site_idEC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 1016
ChainResidue
BPRO287
BGLY463
BGLU465
BHOH1539
BHOH1693

site_idEC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO B 1017
ChainResidue
BALA402
BLEU590
BHIS592
BMET602
BPRO603
BASP605
BCU1001
BHOH1703
BHOH1705

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1018
ChainResidue
BALA627
BHOH1704

site_idEC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG B 1019
ChainResidue
BGLU102
BPHE105
BPRO136
BTYR307
BTHR378
BILE379
BGLY380
BPG41007
BHOH1698

site_idEC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG B 1020
ChainResidue
AARG71
AHOH1664
BARG13
BLEU14
BALA15
BSER16
BSER325
BVAL327

site_idEC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG B 1021
ChainResidue
BTRP349
BTRP349
BARG370
BTYR389
BGLU399
BLYS401
BEDO1015
BHOH1657
BHOH1744
BHOH1768

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG B 1022
ChainResidue
BGLU486
BASP488
BARG493
BHOH1566
BHOH1681
BHOH1923

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B 1023
ChainResidue
BARG472
BHOH1227
BHOH1697
BHOH1756
BHOH1843

site_idFC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG B 1024
ChainResidue
AHOH1614
BPHE195
BPRO196
BPRO412
BGLU413
BPGE1003
BHOH1468
BHOH1656
BHOH1666

site_idFC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE HDZ B 1025
ChainResidue
BALA487
BARG490
BHOH1136
BHOH1467

Functional Information from PROSITE/UniProt
site_idPS01164
Number of Residues14
DetailsCOPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. MVIsfftTigNYDY
ChainResidueDetails
AMET371-TYR384

site_idPS01165
Number of Residues14
DetailsCOPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGltHFprvEDwP
ChainResidueDetails
ATHR587-PRO600

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
AASP298
BASP298

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Schiff-base intermediate with substrate; via topaquinone => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
ATPQ382
BTPQ382

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
ATYR296
BTYR296

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P46883
ChainResidueDetails
AILE379
BILE379

site_idSWS_FT_FI5
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:9405045, ECO:0007744|PDB:1AV4, ECO:0007744|PDB:1AVL, ECO:0007744|PDB:1IU7, ECO:0007744|PDB:1IVU, ECO:0007744|PDB:1IVV, ECO:0007744|PDB:1IVW, ECO:0007744|PDB:1IVX, ECO:0007744|PDB:1RJO, ECO:0007744|PDB:1SIH, ECO:0007744|PDB:1SII, ECO:0007744|PDB:1UI8, ECO:0007744|PDB:1W4N, ECO:0007744|PDB:1W5Z, ECO:0007744|PDB:1W6C, ECO:0007744|PDB:1W6G, ECO:0007744|PDB:2BT3, ECO:0007744|PDB:2CFD, ECO:0007744|PDB:2CFG, ECO:0007744|PDB:2CFK, ECO:0007744|PDB:2CFL, ECO:0007744|PDB:2CFW, ECO:0007744|PDB:2CG0, ECO:0007744|PDB:2CG1, ECO:0007744|PDB:2CWT, ECO:0007744|PDB:2CWU, ECO:0007744|PDB:2CWV, ECO:0007744|PDB:2D1W, ECO:0007744|PDB:2E2T, ECO:0007744|PDB:2E2U, ECO:0007744|PDB:2E2V, ECO:0007744|PDB:2YX9, ECO:0007744|PDB:2ZL8, ECO:0007744|PDB:3AMO, ECO:0007744|PDB:3KII, ECO:0007744|PDB:3KN4, ECO:0007744|PDB:3WA2, ECO:0007744|PDB:3WA3
ChainResidueDetails
AHIS431
AHIS433
AHIS592
BHIS431
BHIS433
BHIS592

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: 2',4',5'-topaquinone => ECO:0000269|PubMed:9405045
ChainResidueDetails
ATPQ382
BTPQ382

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon