Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3UWQ

1.80 Angstrom resolution crystal structure of orotidine 5'-phosphate decarboxylase from Vibrio cholerae O1 biovar eltor str. N16961 in complex with uridine-5'-monophosphate (UMP)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE U5P A 232
ChainResidue
AALA9
AGLY210
AARG211
APGE236
AHOH267
AHOH277
AHOH288
AHOH296
AHOH302
AHOH331
BILE66
AASP11
BHOH249
ALYS33
ATHR120
APRO178
AGLY179
AARG181
AVAL208
AILE209

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE XPE A 233
ChainResidue
AILE66
AASN68
ASER71
ALYS72
AHOH346
AHOH397
AHOH439
AHOH478
AHOH483
BTYR12
BARG211
BTHR214
BHOH304
BHOH465

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PEG A 234
ChainResidue
AASP11
AGLN215

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 235
ChainResidue
AHIS51
APHE55
AGLY81
AARG171

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGE A 236
ChainResidue
AARG211
AU5P232
AHOH433
AHOH444
BILE66
BASN68

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TRS A 237
ChainResidue
AASP23
AILE25
AASP26
APRO27
ALEU112
AASP153
ALYS174
AGLU220
AHOH335
AHOH370
AHOH461
AHOH471

site_idAC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE U5P B 232
ChainResidue
AILE66
AHOH290
AHOH430
BALA9
BASP11
BLYS33
BTHR120
BPRO178
BARG181
BVAL208
BGLY210
BARG211
BHOH266
BHOH320
BHOH376
BHOH381
BHOH397
BHOH429
BHOH433

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B 233
ChainResidue
BHIS51
BGLY54
BPHE55
BGLY81
BHOH313

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG B 234
ChainResidue
AALA201
ASER202
AHOH448
BSER163
BHOH399
BHOH406

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGE B 235
ChainResidue
BALA78
BGLU79
BPRO105

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. VFlDlKfhDIPnTC
ChainResidueDetails
AVAL57-CYS70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
ALYS62
BLYS62

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
AASP11
BLYS33
BASP60
BTHR120
BARG181
BGLN190
BGLY210
BARG211
ALYS33
AASP60
ATHR120
AARG181
AGLN190
AGLY210
AARG211
BASP11

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon