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3RTV

Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in a closed ternary complex with natural primer/template DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DCP A 1
ChainResidue
AMG2
AGLN613
AILE614
AGLU615
AHIS639
AARG659
ALYS663
APHE667
AASP785
AMG833
AHOH841
AHOH6
AHOH842
BHOH19
BDDG112
CDG204
AHOH30
AHOH188
AHOH204
AARG573
AASP610
ATYR611
ASER612

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 833
ChainResidue
ADCP1
AMG2
AASP610
ATYR611
AASP785

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
ADCP1
AASP610
AASP785
AMG833
AHOH840
AHOH842
BDDG112

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 834
ChainResidue
AARG313
ATRP318

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 3
ChainResidue
AHOH41
AARG425
ATRP428
ATYR811

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 4
ChainResidue
AHOH190
ATHR544
ATYR545
APRO579
AASN580
AASN583
CDC209
CDC210

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 5
ChainResidue
AHOH282
AASP452
ATYR455
AARG596
AARG596
AASP826
AHOH854

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 835
ChainResidue
AHOH175
AHOH225
AGLU462
AGLU466
AARG593
AGLU825

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 836
ChainResidue
AILE684

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 837
ChainResidue
AASP371
ATRP417
AARG431
AARG435

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 838
ChainResidue
ALEU711
AGLU742
AGLU745
AARG746
APHE749
CHOH323

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1
ChainResidue
BHOH60
BHOH66
BHOH174
BHOH255
CHOH285

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 1
ChainResidue
AALA570
AARG728
CHOH164
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-08-07

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