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3PY8

Crystal structure of a mutant of the large fragment of DNA polymerase I from thermus aquaticus in a closed ternary complex with DNA and ddCTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DCT A 113
ChainResidue
AMG2
AGLN613
ALYS614
AGLU615
AHIS639
AARG659
ALYS663
APHE667
AASP785
AMN833
AHOH858
AHOH65
AHOH956
AHOH983
BHOH29
BDOC112
CDG204
CDG205
AHOH100
AHOH205
AHOH212
AARG573
AASP610
ATYR611
ASER612

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1
ChainResidue
AHOH176
AHOH211
ATHR544
ATYR545
APRO579
AASN580
AASN583
CDC209
CDC210

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 833
ChainResidue
AMG2
ADCT113
AASP610
ATYR611
AASP785

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
ADCT113
AHOH205
AASP610
AASP785
AMN833
AHOH870
BDOC112

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 5
ChainResidue
AHOH157
AHOH213
AGLU462
AGLU465
AGLU602
AHOH904

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 6
ChainResidue
AHOH263
AHOH274
AHOH278
AHIS443
AHOH941

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 834
ChainResidue
AGLU432
AGLU432

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 3
ChainResidue
BDG107
BHOH220
BHOH312
BHOH342
BHOH410
BHOH469

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN C 4
ChainResidue
CHOH185
CHOH186
CDG205
CHOH218
CHOH240
CHOH250

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

218853

PDB entries from 2024-04-24

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