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3PDC

Crystal structure of hydrolase domain of human soluble epoxide hydrolase complexed with a benzoxazole inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ZYI A 1
ChainResidue
APHE265
ATRP524
AASP333
AMET337
ATYR381
AGLN382
ALEU406
ALEU427
ATYR465
AHIS523

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ZYI B 2
ChainResidue
BPHE265
BASP333
BTRP334
BTHR358
BTYR381
BGLN382
BLEU406
BLEU427
BTYR465
BHIS523
BTRP524

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:15096040, ECO:0000269|PubMed:16322563, ECO:0000269|PubMed:19746975, ECO:0000269|PubMed:19969453, ECO:0000269|PubMed:20934334
ChainResidueDetails
AASP333
BASP333

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000269|PubMed:15096040, ECO:0000269|PubMed:16322563, ECO:0000269|PubMed:19746975, ECO:0000269|PubMed:19969453, ECO:0000269|PubMed:20934334
ChainResidueDetails
ATYR465
BTYR465

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:15096040, ECO:0000269|PubMed:16322563, ECO:0000269|PubMed:19746975, ECO:0000269|PubMed:19969453, ECO:0000269|PubMed:20934334
ChainResidueDetails
AHIS523
BHIS523

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15096040, ECO:0000269|PubMed:16322563, ECO:0000269|PubMed:19746975, ECO:0000269|PubMed:19969453, ECO:0000269|PubMed:20934334
ChainResidueDetails
ATYR381
BTYR381

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P34914
ChainResidueDetails
ASER368
BSER368

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P34914
ChainResidueDetails
ALYS420
ALYS454
BLYS420
BLYS454

site_idSWS_FT_FI7
Number of Residues2
DetailsLIPID: S-(15-deoxy-Delta12,14-prostaglandin J2-9-yl)cysteine => ECO:0000305|PubMed:21164107
ChainResidueDetails
ACYS521
BCYS521

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PDB entries from 2024-08-28

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