3PDC
Crystal structure of hydrolase domain of human soluble epoxide hydrolase complexed with a benzoxazole inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-06-22 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.523, 79.902, 89.318 |
Unit cell angles | 90.00, 90.22, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.600 |
R-factor | 0.279 |
Rwork | 0.279 |
R-free | 0.33300 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1s80 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.550 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | CNS |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.570 | 2.600 |
Rmerge | 0.120 | 0.061 | 0.381 |
Number of reflections | 18410 | ||
<I/σ(I)> | 6.8 | ||
Completeness [%] | 90.0 | 98.6 | 80.9 |
Redundancy | 2.6 | 3.1 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.4 | 298 | 26-30% PEG6K, 0.1M sodium cacodylate, 0.07M ammonium acetate, 0.1M magnesium acetate, pH 7.4, VAPOR DIFFUSION, temperature 298K |