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3OY9

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution

Replaces:  3L2S
Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_id1
Number of Residues
Details
ChainResidue

site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 393
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 394
ChainResidue
AASP128
AASP185
AMN395
AHOH399
AHOH400

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 395
ChainResidue
AASP128
AGLU221
AMN394
AHOH398
DDA17

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 396
ChainResidue
AHIS338
ALYS339
AHOH430
AHOH468

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 801
ChainResidue
ASER162
ATHR163
ASER164
AHOH444

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 802
ChainResidue
ASER136
AGLN137
ALYS241

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 803
ChainResidue
ALEU292
AGLN296
BASP273

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 805
ChainResidue
AGLN60
ATYR80
APRO277
APHE278

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NH4 A 397
ChainResidue
AASP116

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 393
ChainResidue
BASP128
BASP185
BHOH395
BHOH396
BHOH439
CDA19

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 394
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues312
DetailsDomain: {"description":"Integrase catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00457","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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