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3NVK

Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0030515molecular_functionsnoRNA binding
A0031428cellular_componentbox C/D methylation guide snoRNP complex
A0032040cellular_componentsmall-subunit processome
E0001682biological_processtRNA 5'-leader removal
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0004526molecular_functionribonuclease P activity
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006364biological_processrRNA processing
E0006412biological_processtranslation
E0008033biological_processtRNA processing
E0019843molecular_functionrRNA binding
E0022627cellular_componentcytosolic small ribosomal subunit
E0042254biological_processribosome biogenesis
E1990904cellular_componentribonucleoprotein complex
F0005515molecular_functionprotein binding
F0030515molecular_functionsnoRNA binding
F0031428cellular_componentbox C/D methylation guide snoRNP complex
F0032040cellular_componentsmall-subunit processome
H0001682biological_processtRNA 5'-leader removal
H0003723molecular_functionRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0004526molecular_functionribonuclease P activity
H0005737cellular_componentcytoplasm
H0005840cellular_componentribosome
H0006364biological_processrRNA processing
H0006412biological_processtranslation
H0008033biological_processtRNA processing
H0019843molecular_functionrRNA binding
H0022627cellular_componentcytosolic small ribosomal subunit
H0042254biological_processribosome biogenesis
H1990904cellular_componentribonucleoprotein complex
I0000494biological_processbox C/D sno(s)RNA 3'-end processing
I0003723molecular_functionRNA binding
I0005515molecular_functionprotein binding
I0006338biological_processchromatin remodeling
I0006364biological_processrRNA processing
I0008033biological_processtRNA processing
I0008168molecular_functionmethyltransferase activity
I0008649molecular_functionrRNA methyltransferase activity
I0016740molecular_functiontransferase activity
I0031167biological_processrRNA methylation
I0031428cellular_componentbox C/D methylation guide snoRNP complex
I0032259biological_processmethylation
I1990259molecular_functionhistone H2AQ104 methyltransferase activity
J0000494biological_processbox C/D sno(s)RNA 3'-end processing
J0003723molecular_functionRNA binding
J0005515molecular_functionprotein binding
J0006338biological_processchromatin remodeling
J0006364biological_processrRNA processing
J0008033biological_processtRNA processing
J0008168molecular_functionmethyltransferase activity
J0008649molecular_functionrRNA methyltransferase activity
J0016740molecular_functiontransferase activity
J0031167biological_processrRNA methylation
J0031428cellular_componentbox C/D methylation guide snoRNP complex
J0032259biological_processmethylation
J1990259molecular_functionhistone H2AQ104 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAM I 228
ChainResidue
AGLU352
IASP130
IALA131
IASP150
IVAL151
IGLN153
IGLU216
ATYR353
ILYS57
IGLY81
IALA83
IILE104
IGLU105
IPHE106
IGLY129

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE SAM J 228
ChainResidue
FGLU352
FTYR353
JLYS57
JGLY81
JALA83
JGLU105
JPHE106
JASP130
JALA131
JASP150
JVAL151
JGLN153

Functional Information from PROSITE/UniProt
site_idPS00566
Number of Residues15
DetailsFIBRILLARIN Fibrillarin signature. GKIYGIEFSpRvlRE
ChainResidueDetails
IGLY99-GLU113

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekeIPYiyVpSKkeLG
ChainResidueDetails
ECYS71-GLY88

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00351
ChainResidueDetails
ITHR86
JTHR86

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
IGLU105
IASP130
IASP150
JGLU105
JASP130
JASP150

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PDB entries from 2024-05-01

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