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3NKB

A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage

Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BG35
BHOH522
BHOH615
BHOH635
BHOH656
BHOH661
BHOH663

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BHOH653
BHOH570
BHOH651

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 203
ChainResidue
BHOH510
BHOH511
BHOH513
BHOH514
BHOH515
BHOH555

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 204
ChainResidue
BG55
BU56
BHOH507
BHOH508
BHOH509
BHOH516

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 205
ChainResidue
BU56
BA57
BA58
BHOH502
BHOH504
BHOH506
BHOH543

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 206
ChainResidue
BHOH524
BHOH528
BHOH532
BHOH536
BHOH563
BHOH566

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 207
ChainResidue
BC32
BA64
BA65
BHOH600
BHOH613

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 208
ChainResidue
BU24
BHOH596
BHOH604
BHOH645
BHOH647
BHOH657

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 209
ChainResidue
BC25
BHOH544
BHOH573
BHOH623
BHOH650

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 210
ChainResidue
BG40
BHOH530
BHOH630
BHOH631

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PDB entries from 2024-10-16

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