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3MTN

Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004843molecular_functioncysteine-type deubiquitinase activity
A0016579biological_processprotein deubiquitination
C0004843molecular_functioncysteine-type deubiquitinase activity
C0016579biological_processprotein deubiquitination
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 700
ChainResidue
ACYS384
ACYS387
ACYS437
ACYS440

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 700
ChainResidue
CCYS384
CCYS387
CCYS437
CCYS440

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1
ChainResidue
BPHE68
ASER401

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL C 1
ChainResidue
CHOH64
CSER401
DPHE68

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 563
ChainResidue
ALYS360
AARG454

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 2
ChainResidue
AGLU311
AHIS314
AILE370

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 3
ChainResidue
CGLU311
CHIS314
CILE370
CVAL371
DGLY47

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 564
ChainResidue
AARG417

Functional Information from PROSITE/UniProt
site_idPS00972
Number of Residues16
DetailsUSP_1 Ubiquitin specific protease (USP) domain signature 1. GLrnlGNtCFLNAvLQ
ChainResidueDetails
AGLY213-GLN228

site_idPS00973
Number of Residues18
DetailsUSP_2 Ubiquitin specific protease (USP) domain signature 2. YqLyALcnHsGsvhy..GHY
ChainResidueDetails
ATYR502-TYR519

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
BARG54
BARG72
DARG54
DARG72

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for function
ChainResidueDetails
BPHE68
DPHE68

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291
ChainResidueDetails
BSER65
DSER65
ACYS437
ACYS440
CCYS384
CCYS387
CCYS437
CCYS440

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
ChainResidueDetails
BTHR66
DTHR66

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742
ChainResidueDetails
BGLY76
DGLY76

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
ChainResidueDetails
BLYS6
DLYS6

site_idSWS_FT_FI7
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
BGLY76
DGLY76

site_idSWS_FT_FI8
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
ChainResidueDetails
BLYS11
BLYS48
DLYS11
DLYS48

site_idSWS_FT_FI9
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
ChainResidueDetails
BLYS27
DLYS27

site_idSWS_FT_FI10
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
ChainResidueDetails
BLYS29
DLYS29

site_idSWS_FT_FI11
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
ChainResidueDetails
BLYS33
DLYS33

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
ChainResidueDetails
BLYS63
DLYS63

218853

PDB entries from 2024-04-24

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