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3KMZ

Crystal structure of RARalpha ligand binding domain in complex with the inverse agonist BMS493 and a corepressor fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
A0048384biological_processretinoic acid receptor signaling pathway
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
B0048384biological_processretinoic acid receptor signaling pathway
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE EQO B 1
ChainResidue
BHOH11
BARG276
BPHE286
BSER287
BPHE302
CLEU2051
CHIS2054
BPHE199
BPHE228
BSER232
BTHR233
BCYS235
BILE236
BLEU269
BILE273

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 422
ChainResidue
BTHR210
BASN211
BASN293
BGLN296
BHOH445

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 4
ChainResidue
BTHR210
BASN212
BLEU224
BLYS227

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 5
ChainResidue
BALA263
BLEU266
BASP267
BARG385
BSER388
BHOH429
BHOH437

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 9
ChainResidue
BLEU319
BGLU320
BGLU325
BVAL363
BARG366
BARG367
BARG370
BMET373
BMET377

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE EQO A 2
ChainResidue
AHOH20
APHE199
ATRP225
APHE228
ASER232
ACYS235
AILE236
ALEU269
AILE273
AARG276
APHE286
ASER287
APHE302
DLEU2051
DHIS2054

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 422
ChainResidue
ALEU319
AGLU320
AGLU325
AVAL363
AARG366
AARG367
AARG370
AMET373
AMET377

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 3
ChainResidue
AHOH40
ALEU220
AGLY301
AARG394
AILE396
ATHR397

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 6
ChainResidue
ATHR210
AASN211
ASER214
AHOH423
AHOH469

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 7
ChainResidue
ALYS360
ALYS360
AARG364
APRO371
APHE374
APRO375

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 8
ChainResidue
AHOH54
AHOH88
AALA263
ALEU266
AASP267
AARG385
ASER388
AALA389

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsMOD_RES: Phosphoserine; by PKA => ECO:0000269|PubMed:20215566
ChainResidueDetails
BSER219
BSER369
ASER219
ASER369

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:19850744
ChainResidueDetails
BLYS399
ALYS399

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PDB entries from 2024-07-24

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