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3J98

Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State IIIa)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000149molecular_functionSNARE binding
A0001921biological_processpositive regulation of receptor recycling
A0003689molecular_functionDNA clamp loader activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005794cellular_componentGolgi apparatus
A0005795cellular_componentGolgi stack
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006338biological_processchromatin remodeling
A0006813biological_processpotassium ion transport
A0006886biological_processintracellular protein transport
A0006891biological_processintra-Golgi vesicle-mediated transport
A0015031biological_processprotein transport
A0016787molecular_functionhydrolase activity
A0016887molecular_functionATP hydrolysis activity
A0017075molecular_functionsyntaxin-1 binding
A0019901molecular_functionprotein kinase binding
A0019905molecular_functionsyntaxin binding
A0030165molecular_functionPDZ domain binding
A0030496cellular_componentmidbody
A0035255molecular_functionionotropic glutamate receptor binding
A0035494biological_processSNARE complex disassembly
A0042802molecular_functionidentical protein binding
A0043001biological_processGolgi to plasma membrane protein transport
A0044877molecular_functionprotein-containing complex binding
A0045732biological_processpositive regulation of protein catabolic process
A0046872molecular_functionmetal ion binding
A0061775molecular_functioncohesin loader activity
A0140545molecular_functionATP-dependent protein disaggregase activity
A0140584molecular_functionchromatin extrusion motor activity
A0140588biological_processchromatin looping
A0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
A0140849molecular_functionATP-dependent H2AZ histone chaperone activity
B0000149molecular_functionSNARE binding
B0001921biological_processpositive regulation of receptor recycling
B0003689molecular_functionDNA clamp loader activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005794cellular_componentGolgi apparatus
B0005795cellular_componentGolgi stack
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006338biological_processchromatin remodeling
B0006813biological_processpotassium ion transport
B0006886biological_processintracellular protein transport
B0006891biological_processintra-Golgi vesicle-mediated transport
B0015031biological_processprotein transport
B0016787molecular_functionhydrolase activity
B0016887molecular_functionATP hydrolysis activity
B0017075molecular_functionsyntaxin-1 binding
B0019901molecular_functionprotein kinase binding
B0019905molecular_functionsyntaxin binding
B0030165molecular_functionPDZ domain binding
B0030496cellular_componentmidbody
B0035255molecular_functionionotropic glutamate receptor binding
B0035494biological_processSNARE complex disassembly
B0042802molecular_functionidentical protein binding
B0043001biological_processGolgi to plasma membrane protein transport
B0044877molecular_functionprotein-containing complex binding
B0045732biological_processpositive regulation of protein catabolic process
B0046872molecular_functionmetal ion binding
B0061775molecular_functioncohesin loader activity
B0140545molecular_functionATP-dependent protein disaggregase activity
B0140584molecular_functionchromatin extrusion motor activity
B0140588biological_processchromatin looping
B0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
B0140849molecular_functionATP-dependent H2AZ histone chaperone activity
C0000149molecular_functionSNARE binding
C0001921biological_processpositive regulation of receptor recycling
C0003689molecular_functionDNA clamp loader activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005794cellular_componentGolgi apparatus
C0005795cellular_componentGolgi stack
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0006338biological_processchromatin remodeling
C0006813biological_processpotassium ion transport
C0006886biological_processintracellular protein transport
C0006891biological_processintra-Golgi vesicle-mediated transport
C0015031biological_processprotein transport
C0016787molecular_functionhydrolase activity
C0016887molecular_functionATP hydrolysis activity
C0017075molecular_functionsyntaxin-1 binding
C0019901molecular_functionprotein kinase binding
C0019905molecular_functionsyntaxin binding
C0030165molecular_functionPDZ domain binding
C0030496cellular_componentmidbody
C0035255molecular_functionionotropic glutamate receptor binding
C0035494biological_processSNARE complex disassembly
C0042802molecular_functionidentical protein binding
C0043001biological_processGolgi to plasma membrane protein transport
C0044877molecular_functionprotein-containing complex binding
C0045732biological_processpositive regulation of protein catabolic process
C0046872molecular_functionmetal ion binding
C0061775molecular_functioncohesin loader activity
C0140545molecular_functionATP-dependent protein disaggregase activity
C0140584molecular_functionchromatin extrusion motor activity
C0140588biological_processchromatin looping
C0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
C0140849molecular_functionATP-dependent H2AZ histone chaperone activity
D0000149molecular_functionSNARE binding
D0001921biological_processpositive regulation of receptor recycling
D0003689molecular_functionDNA clamp loader activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005794cellular_componentGolgi apparatus
D0005795cellular_componentGolgi stack
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0006338biological_processchromatin remodeling
D0006813biological_processpotassium ion transport
D0006886biological_processintracellular protein transport
D0006891biological_processintra-Golgi vesicle-mediated transport
D0015031biological_processprotein transport
D0016787molecular_functionhydrolase activity
D0016887molecular_functionATP hydrolysis activity
D0017075molecular_functionsyntaxin-1 binding
D0019901molecular_functionprotein kinase binding
D0019905molecular_functionsyntaxin binding
D0030165molecular_functionPDZ domain binding
D0030496cellular_componentmidbody
D0035255molecular_functionionotropic glutamate receptor binding
D0035494biological_processSNARE complex disassembly
D0042802molecular_functionidentical protein binding
D0043001biological_processGolgi to plasma membrane protein transport
D0044877molecular_functionprotein-containing complex binding
D0045732biological_processpositive regulation of protein catabolic process
D0046872molecular_functionmetal ion binding
D0061775molecular_functioncohesin loader activity
D0140545molecular_functionATP-dependent protein disaggregase activity
D0140584molecular_functionchromatin extrusion motor activity
D0140588biological_processchromatin looping
D0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
D0140849molecular_functionATP-dependent H2AZ histone chaperone activity
E0000149molecular_functionSNARE binding
E0001921biological_processpositive regulation of receptor recycling
E0003689molecular_functionDNA clamp loader activity
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0005794cellular_componentGolgi apparatus
E0005795cellular_componentGolgi stack
E0005829cellular_componentcytosol
E0005886cellular_componentplasma membrane
E0006338biological_processchromatin remodeling
E0006813biological_processpotassium ion transport
E0006886biological_processintracellular protein transport
E0006891biological_processintra-Golgi vesicle-mediated transport
E0015031biological_processprotein transport
E0016787molecular_functionhydrolase activity
E0016887molecular_functionATP hydrolysis activity
E0017075molecular_functionsyntaxin-1 binding
E0019901molecular_functionprotein kinase binding
E0019905molecular_functionsyntaxin binding
E0030165molecular_functionPDZ domain binding
E0030496cellular_componentmidbody
E0035255molecular_functionionotropic glutamate receptor binding
E0035494biological_processSNARE complex disassembly
E0042802molecular_functionidentical protein binding
E0043001biological_processGolgi to plasma membrane protein transport
E0044877molecular_functionprotein-containing complex binding
E0045732biological_processpositive regulation of protein catabolic process
E0046872molecular_functionmetal ion binding
E0061775molecular_functioncohesin loader activity
E0140545molecular_functionATP-dependent protein disaggregase activity
E0140584molecular_functionchromatin extrusion motor activity
E0140588biological_processchromatin looping
E0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
E0140849molecular_functionATP-dependent H2AZ histone chaperone activity
F0000149molecular_functionSNARE binding
F0001921biological_processpositive regulation of receptor recycling
F0003689molecular_functionDNA clamp loader activity
F0005524molecular_functionATP binding
F0005737cellular_componentcytoplasm
F0005794cellular_componentGolgi apparatus
F0005795cellular_componentGolgi stack
F0005829cellular_componentcytosol
F0005886cellular_componentplasma membrane
F0006338biological_processchromatin remodeling
F0006813biological_processpotassium ion transport
F0006886biological_processintracellular protein transport
F0006891biological_processintra-Golgi vesicle-mediated transport
F0015031biological_processprotein transport
F0016787molecular_functionhydrolase activity
F0016887molecular_functionATP hydrolysis activity
F0017075molecular_functionsyntaxin-1 binding
F0019901molecular_functionprotein kinase binding
F0019905molecular_functionsyntaxin binding
F0030165molecular_functionPDZ domain binding
F0030496cellular_componentmidbody
F0035255molecular_functionionotropic glutamate receptor binding
F0035494biological_processSNARE complex disassembly
F0042802molecular_functionidentical protein binding
F0043001biological_processGolgi to plasma membrane protein transport
F0044877molecular_functionprotein-containing complex binding
F0045732biological_processpositive regulation of protein catabolic process
F0046872molecular_functionmetal ion binding
F0061775molecular_functioncohesin loader activity
F0140545molecular_functionATP-dependent protein disaggregase activity
F0140584molecular_functionchromatin extrusion motor activity
F0140588biological_processchromatin looping
F0140665molecular_functionATP-dependent H3-H4 histone complex chaperone activity
F0140849molecular_functionATP-dependent H2AZ histone chaperone activity
G0000149molecular_functionSNARE binding
G0005483molecular_functionsoluble NSF attachment protein activity
G0005515molecular_functionprotein binding
G0005886cellular_componentplasma membrane
G0006886biological_processintracellular protein transport
G0007420biological_processbrain development
G0010807biological_processregulation of synaptic vesicle priming
G0015031biological_processprotein transport
G0016082biological_processsynaptic vesicle priming
G0016192biological_processvesicle-mediated transport
G0019905molecular_functionsyntaxin binding
G0030182biological_processneuron differentiation
G0031594cellular_componentneuromuscular junction
G0032781biological_processpositive regulation of ATP-dependent activity
G0032984biological_processprotein-containing complex disassembly
G0035249biological_processsynaptic transmission, glutamatergic
G0035494biological_processSNARE complex disassembly
G0043195cellular_componentterminal bouton
G0044877molecular_functionprotein-containing complex binding
G0045176biological_processapical protein localization
G0048787cellular_componentpresynaptic active zone membrane
G0061025biological_processmembrane fusion
G0070044cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a complex
G0098793cellular_componentpresynapse
G0098794cellular_componentpostsynapse
G0098978cellular_componentglutamatergic synapse
H0000149molecular_functionSNARE binding
H0005483molecular_functionsoluble NSF attachment protein activity
H0005515molecular_functionprotein binding
H0005886cellular_componentplasma membrane
H0006886biological_processintracellular protein transport
H0007420biological_processbrain development
H0010807biological_processregulation of synaptic vesicle priming
H0015031biological_processprotein transport
H0016082biological_processsynaptic vesicle priming
H0016192biological_processvesicle-mediated transport
H0019905molecular_functionsyntaxin binding
H0030182biological_processneuron differentiation
H0031594cellular_componentneuromuscular junction
H0032781biological_processpositive regulation of ATP-dependent activity
H0032984biological_processprotein-containing complex disassembly
H0035249biological_processsynaptic transmission, glutamatergic
H0035494biological_processSNARE complex disassembly
H0043195cellular_componentterminal bouton
H0044877molecular_functionprotein-containing complex binding
H0045176biological_processapical protein localization
H0048787cellular_componentpresynaptic active zone membrane
H0061025biological_processmembrane fusion
H0070044cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a complex
H0098793cellular_componentpresynapse
H0098794cellular_componentpostsynapse
H0098978cellular_componentglutamatergic synapse
I0000149molecular_functionSNARE binding
I0005483molecular_functionsoluble NSF attachment protein activity
I0005515molecular_functionprotein binding
I0005886cellular_componentplasma membrane
I0006886biological_processintracellular protein transport
I0007420biological_processbrain development
I0010807biological_processregulation of synaptic vesicle priming
I0015031biological_processprotein transport
I0016082biological_processsynaptic vesicle priming
I0016192biological_processvesicle-mediated transport
I0019905molecular_functionsyntaxin binding
I0030182biological_processneuron differentiation
I0031594cellular_componentneuromuscular junction
I0032781biological_processpositive regulation of ATP-dependent activity
I0032984biological_processprotein-containing complex disassembly
I0035249biological_processsynaptic transmission, glutamatergic
I0035494biological_processSNARE complex disassembly
I0043195cellular_componentterminal bouton
I0044877molecular_functionprotein-containing complex binding
I0045176biological_processapical protein localization
I0048787cellular_componentpresynaptic active zone membrane
I0061025biological_processmembrane fusion
I0070044cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a complex
I0098793cellular_componentpresynapse
I0098794cellular_componentpostsynapse
I0098978cellular_componentglutamatergic synapse
J0000149molecular_functionSNARE binding
J0005483molecular_functionsoluble NSF attachment protein activity
J0005515molecular_functionprotein binding
J0005886cellular_componentplasma membrane
J0006886biological_processintracellular protein transport
J0007420biological_processbrain development
J0010807biological_processregulation of synaptic vesicle priming
J0015031biological_processprotein transport
J0016082biological_processsynaptic vesicle priming
J0016192biological_processvesicle-mediated transport
J0019905molecular_functionsyntaxin binding
J0030182biological_processneuron differentiation
J0031594cellular_componentneuromuscular junction
J0032781biological_processpositive regulation of ATP-dependent activity
J0032984biological_processprotein-containing complex disassembly
J0035249biological_processsynaptic transmission, glutamatergic
J0035494biological_processSNARE complex disassembly
J0043195cellular_componentterminal bouton
J0044877molecular_functionprotein-containing complex binding
J0045176biological_processapical protein localization
J0048787cellular_componentpresynaptic active zone membrane
J0061025biological_processmembrane fusion
J0070044cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a complex
J0098793cellular_componentpresynapse
J0098794cellular_componentpostsynapse
J0098978cellular_componentglutamatergic synapse
K0016020cellular_componentmembrane
K0016192biological_processvesicle-mediated transport
L0005484molecular_functionSNAP receptor activity
L0006886biological_processintracellular protein transport
L0016020cellular_componentmembrane
L0016192biological_processvesicle-mediated transport
M0000149molecular_functionSNARE binding
M0001917cellular_componentphotoreceptor inner segment
M0005249molecular_functionvoltage-gated potassium channel activity
M0005484molecular_functionSNAP receptor activity
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005768cellular_componentendosome
M0005802cellular_componenttrans-Golgi network
M0005856cellular_componentcytoskeleton
M0005886cellular_componentplasma membrane
M0005938cellular_componentcell cortex
M0006887biological_processexocytosis
M0007269biological_processneurotransmitter secretion
M0007409biological_processaxonogenesis
M0007616biological_processlong-term memory
M0007626biological_processlocomotory behavior
M0008021cellular_componentsynaptic vesicle
M0008076cellular_componentvoltage-gated potassium channel complex
M0008289molecular_functionlipid binding
M0008306biological_processassociative learning
M0010975biological_processregulation of neuron projection development
M0015629cellular_componentactin cytoskeleton
M0016020cellular_componentmembrane
M0016079biological_processsynaptic vesicle exocytosis
M0016082biological_processsynaptic vesicle priming
M0016197biological_processendosomal transport
M0017022molecular_functionmyosin binding
M0017075molecular_functionsyntaxin-1 binding
M0019904molecular_functionprotein domain specific binding
M0030027cellular_componentlamellipodium
M0030175cellular_componentfilopodium
M0030182biological_processneuron differentiation
M0030424cellular_componentaxon
M0030426cellular_componentgrowth cone
M0031083cellular_componentBLOC-1 complex
M0031201cellular_componentSNARE complex
M0031629biological_processsynaptic vesicle fusion to presynaptic active zone membrane
M0031982cellular_componentvesicle
M0032024biological_processpositive regulation of insulin secretion
M0035493biological_processSNARE complex assembly
M0036477cellular_componentsomatodendritic compartment
M0042734cellular_componentpresynaptic membrane
M0043005cellular_componentneuron projection
M0043025cellular_componentneuronal cell body
M0043195cellular_componentterminal bouton
M0044295cellular_componentaxonal growth cone
M0044325molecular_functiontransmembrane transporter binding
M0045202cellular_componentsynapse
M0046887biological_processpositive regulation of hormone secretion
M0048306molecular_functioncalcium-dependent protein binding
M0048471cellular_componentperinuclear region of cytoplasm
M0048791biological_processcalcium ion-regulated exocytosis of neurotransmitter
M0051963biological_processregulation of synapse assembly
M0060291biological_processlong-term synaptic potentiation
M0070032cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
M0070033cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex
M0070044cellular_componentsynaptobrevin 2-SNAP-25-syntaxin-1a complex
M0070201biological_processregulation of establishment of protein localization
M0071805biological_processpotassium ion transmembrane transport
M0097470cellular_componentribbon synapse
M0098793cellular_componentpresynapse
M0098794cellular_componentpostsynapse
M0098888cellular_componentextrinsic component of presynaptic membrane
M0098967biological_processexocytic insertion of neurotransmitter receptor to postsynaptic membrane
M0098978cellular_componentglutamatergic synapse
M0099525biological_processpresynaptic dense core vesicle exocytosis
M0099590biological_processneurotransmitter receptor internalization
Functional Information from PROSITE/UniProt
site_idPS00417
Number of Residues20
DetailsSYNAPTOBREVIN Synaptobrevin signature. NVDKVlERdqKLSeLdDRAD
ChainResidueDetails
KASN49-ASP68

site_idPS00674
Number of Residues19
DetailsAAA AAA-protein family signature. IlVIgMTNrpdlIDeALl.R
ChainResidueDetails
AILE367-ARG385

site_idPS00914
Number of Residues40
DetailsSYNTAXIN Syntaxin / epimorphin family signature. RhseIikLEnsIrELhdMFmdMamlVesQGemIDrIEyn.V
ChainResidueDetails
LARG198-VAL237

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsSITE: (Microbial infection) Cleavage; by C.botulinum neurotoxin type E (BoNT/E) => ECO:0000269|PubMed:8243676, ECO:0000269|PubMed:8294407, ECO:0000305|PubMed:8103915
ChainResidueDetails
MARG180
EPRO545
FASN505
FPRO545
IMET1
JMET1
GMET1
CASN505
CPRO545
DASN505
DPRO545
EASN505

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: (Microbial infection) Cleavage; by C.botulinum neurotoxin type A (BoNT/A, botA) => ECO:0000269|PubMed:8243676, ECO:0000269|PubMed:8294407, ECO:0000305|PubMed:8103915
ChainResidueDetails
MGLN197
ISER26
LLYS253
LLYS256
ETHR550
FTHR550

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by PKC and PKA => ECO:0000269|PubMed:12459461
ChainResidueDetails
MTHR138
HSER195
ISER29
ISER195
JSER29
JSER195
GSER29
GSER195

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P60879
ChainResidueDetails
MSER154
BSER207
CSER207
DSER207
ESER207
FSER207

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine; by PKC => ECO:0000269|PubMed:12459461
ChainResidueDetails
MSER187
BTYR259
CTYR259
DTYR259
ETYR259
FTYR259

site_idSWS_FT_FI6
Number of Residues4
DetailsLIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:P60879
ChainResidueDetails
MCYS85
MCYS88
MCYS90
MCYS92
ESER569
FSER569

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
ALYS549electrostatic stabiliser
ATHR550electrostatic stabiliser
AASP603electrostatic stabiliser
AASP604proton acceptor
ALYS631electrostatic stabiliser
ALYS708electrostatic stabiliser

site_idMCSA2
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
BLYS549electrostatic stabiliser
BTHR550electrostatic stabiliser
BASP603electrostatic stabiliser
BASP604proton acceptor
BLYS631electrostatic stabiliser
BLYS708electrostatic stabiliser

site_idMCSA3
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
CLYS549electrostatic stabiliser
CTHR550electrostatic stabiliser
CASP603electrostatic stabiliser
CASP604proton acceptor
CLYS631electrostatic stabiliser
CLYS708electrostatic stabiliser

site_idMCSA4
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
DLYS549electrostatic stabiliser
DTHR550electrostatic stabiliser
DASP603electrostatic stabiliser
DASP604proton acceptor
DLYS631electrostatic stabiliser
DLYS708electrostatic stabiliser

site_idMCSA5
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
ELYS549electrostatic stabiliser
ETHR550electrostatic stabiliser
EASP603electrostatic stabiliser
EASP604proton acceptor
ELYS631electrostatic stabiliser
ELYS708electrostatic stabiliser

site_idMCSA6
Number of Residues6
DetailsM-CSA 642
ChainResidueDetails
FLYS549electrostatic stabiliser
FTHR550electrostatic stabiliser
FASP603electrostatic stabiliser
FASP604proton acceptor
FLYS631electrostatic stabiliser
FLYS708electrostatic stabiliser

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PDB entries from 2024-11-06

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