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3INL

Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, complexed with agonist Alda-1

Functional Information from GO Data
ChainGOidnamespacecontents
A0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
A0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0005975biological_processcarbohydrate metabolic process
A0006066biological_processalcohol metabolic process
A0006068biological_processethanol catabolic process
A0008957molecular_functionphenylacetaldehyde dehydrogenase activity
A0009055molecular_functionelectron transfer activity
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0018547molecular_functionnitroglycerin reductase activity
A0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
A0046185biological_processaldehyde catabolic process
A0051287molecular_functionNAD binding
A0070062cellular_componentextracellular exosome
A0106435molecular_functioncarboxylesterase activity
A1903179biological_processregulation of dopamine biosynthetic process
A1905627biological_processregulation of serotonin biosynthetic process
B0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
B0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
B0005739cellular_componentmitochondrion
B0005759cellular_componentmitochondrial matrix
B0005975biological_processcarbohydrate metabolic process
B0006066biological_processalcohol metabolic process
B0006068biological_processethanol catabolic process
B0008957molecular_functionphenylacetaldehyde dehydrogenase activity
B0009055molecular_functionelectron transfer activity
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0018547molecular_functionnitroglycerin reductase activity
B0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
B0046185biological_processaldehyde catabolic process
B0051287molecular_functionNAD binding
B0070062cellular_componentextracellular exosome
B0106435molecular_functioncarboxylesterase activity
B1903179biological_processregulation of dopamine biosynthetic process
B1905627biological_processregulation of serotonin biosynthetic process
C0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
C0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
C0005739cellular_componentmitochondrion
C0005759cellular_componentmitochondrial matrix
C0005975biological_processcarbohydrate metabolic process
C0006066biological_processalcohol metabolic process
C0006068biological_processethanol catabolic process
C0008957molecular_functionphenylacetaldehyde dehydrogenase activity
C0009055molecular_functionelectron transfer activity
C0016491molecular_functionoxidoreductase activity
C0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C0018547molecular_functionnitroglycerin reductase activity
C0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
C0046185biological_processaldehyde catabolic process
C0051287molecular_functionNAD binding
C0070062cellular_componentextracellular exosome
C0106435molecular_functioncarboxylesterase activity
C1903179biological_processregulation of dopamine biosynthetic process
C1905627biological_processregulation of serotonin biosynthetic process
D0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
D0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
D0005739cellular_componentmitochondrion
D0005759cellular_componentmitochondrial matrix
D0005975biological_processcarbohydrate metabolic process
D0006066biological_processalcohol metabolic process
D0006068biological_processethanol catabolic process
D0008957molecular_functionphenylacetaldehyde dehydrogenase activity
D0009055molecular_functionelectron transfer activity
D0016491molecular_functionoxidoreductase activity
D0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D0018547molecular_functionnitroglycerin reductase activity
D0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
D0046185biological_processaldehyde catabolic process
D0051287molecular_functionNAD binding
D0070062cellular_componentextracellular exosome
D0106435molecular_functioncarboxylesterase activity
D1903179biological_processregulation of dopamine biosynthetic process
D1905627biological_processregulation of serotonin biosynthetic process
E0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
E0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
E0005739cellular_componentmitochondrion
E0005759cellular_componentmitochondrial matrix
E0005975biological_processcarbohydrate metabolic process
E0006066biological_processalcohol metabolic process
E0006068biological_processethanol catabolic process
E0008957molecular_functionphenylacetaldehyde dehydrogenase activity
E0009055molecular_functionelectron transfer activity
E0016491molecular_functionoxidoreductase activity
E0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
E0018547molecular_functionnitroglycerin reductase activity
E0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
E0046185biological_processaldehyde catabolic process
E0051287molecular_functionNAD binding
E0070062cellular_componentextracellular exosome
E0106435molecular_functioncarboxylesterase activity
E1903179biological_processregulation of dopamine biosynthetic process
E1905627biological_processregulation of serotonin biosynthetic process
F0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
F0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
F0005739cellular_componentmitochondrion
F0005759cellular_componentmitochondrial matrix
F0005975biological_processcarbohydrate metabolic process
F0006066biological_processalcohol metabolic process
F0006068biological_processethanol catabolic process
F0008957molecular_functionphenylacetaldehyde dehydrogenase activity
F0009055molecular_functionelectron transfer activity
F0016491molecular_functionoxidoreductase activity
F0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
F0018547molecular_functionnitroglycerin reductase activity
F0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
F0046185biological_processaldehyde catabolic process
F0051287molecular_functionNAD binding
F0070062cellular_componentextracellular exosome
F0106435molecular_functioncarboxylesterase activity
F1903179biological_processregulation of dopamine biosynthetic process
F1905627biological_processregulation of serotonin biosynthetic process
G0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
G0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
G0005739cellular_componentmitochondrion
G0005759cellular_componentmitochondrial matrix
G0005975biological_processcarbohydrate metabolic process
G0006066biological_processalcohol metabolic process
G0006068biological_processethanol catabolic process
G0008957molecular_functionphenylacetaldehyde dehydrogenase activity
G0009055molecular_functionelectron transfer activity
G0016491molecular_functionoxidoreductase activity
G0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
G0018547molecular_functionnitroglycerin reductase activity
G0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
G0046185biological_processaldehyde catabolic process
G0051287molecular_functionNAD binding
G0070062cellular_componentextracellular exosome
G0106435molecular_functioncarboxylesterase activity
G1903179biological_processregulation of dopamine biosynthetic process
G1905627biological_processregulation of serotonin biosynthetic process
H0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
H0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
H0005739cellular_componentmitochondrion
H0005759cellular_componentmitochondrial matrix
H0005975biological_processcarbohydrate metabolic process
H0006066biological_processalcohol metabolic process
H0006068biological_processethanol catabolic process
H0008957molecular_functionphenylacetaldehyde dehydrogenase activity
H0009055molecular_functionelectron transfer activity
H0016491molecular_functionoxidoreductase activity
H0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
H0018547molecular_functionnitroglycerin reductase activity
H0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
H0046185biological_processaldehyde catabolic process
H0051287molecular_functionNAD binding
H0070062cellular_componentextracellular exosome
H0106435molecular_functioncarboxylesterase activity
H1903179biological_processregulation of dopamine biosynthetic process
H1905627biological_processregulation of serotonin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 601
ChainResidue
ATHR39
AVAL40
AASP109
AGLN196
AHOH501

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 701
ChainResidue
APHE465
ABXB1001
AASN169
ACYS301
ASER302
ACYS303

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 702
ChainResidue
AASN440
CPHE151
DASN440

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 703
ChainResidue
ALEU367
ACYS369
AGLY370
AHOH1692

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 704
ChainResidue
ATYR153
AARG155
BSER443
DPHE151

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 705
ChainResidue
AASN41
ATHR44
AGLU46
ALEU108
AHOH1733
AHOH3047
DGLU46

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 706
ChainResidue
APHE18
AASP98
ATYR101
ATYR203
AHOH572
AHOH1125
AHOH2611

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BXB A 1001
ChainResidue
AMET124
ALEU173
APHE292
APHE296
AASP457
AVAL458
APHE459
AEDO701

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 601
ChainResidue
BTHR39
BVAL40
BASP109
BGLN196
BHOH3389

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 701
ChainResidue
BASN169
BPHE170
BCYS301
BSER302
BCYS303
BBXB1001

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 702
ChainResidue
BLYS327
BCYS369
BGLY370
BHOH2081

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 703
ChainResidue
ASER443
BTYR153
BARG155
CPHE151

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 704
ChainResidue
BASN41
BTHR44
BGLU46
BLEU108
BHOH2322

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BXB B 1001
ChainResidue
BMET124
BPHE170
BLEU173
BPHE292
BPHE296
BASP457
BVAL458
BPHE459
BEDO701

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA C 601
ChainResidue
CTHR39
CVAL40
CASP109
CGLN196
CHOH501

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 701
ChainResidue
CASN169
CCYS301
CSER302
CBXB1001

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 702
ChainResidue
BPHE151
CTYR153
CARG155
CHOH1990
DSER443

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 703
ChainResidue
CASN41
CTHR44
CILE48
CLEU108
CHOH2616

site_idCC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BXB C 1001
ChainResidue
CPHE292
CPHE296
CASP457
CVAL458
CPHE459
CEDO701
DHOH2063
CMET124
CPHE170
CLEU173

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA D 601
ChainResidue
DTHR39
DVAL40
DASP109
DGLN196
DHOH501

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 701
ChainResidue
DASN169
DPHE170
DSER302
DCYS303
DPHE465
DBXB1001

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 702
ChainResidue
APHE151
CASN440
CSER443
DTYR153
DARG155

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BXB D 1001
ChainResidue
DMET124
DPHE170
DLEU173
DPHE296
DASP457
DPHE459
DEDO701
DHOH1940

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA E 601
ChainResidue
ETHR39
EVAL40
EASP109
EGLN196
EHOH503

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E 701
ChainResidue
EASN169
ECYS301
ESER302
EPHE465
EBXB1001
EHOH2328

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E 702
ChainResidue
EARG329
EVAL330
EVAL331
EHOH2473
EHOH2895
EHOH3046

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E 703
ChainResidue
ETYR153
EARG155
FSER443
HPHE151

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO E 704
ChainResidue
EPHE18
ETYR101
ETYR203
EHOH538
EHOH1986

site_idDC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BXB E 1001
ChainResidue
EMET124
EPHE170
ELEU173
EPHE292
EPHE296
EASP457
EVAL458
EPHE459
EEDO701
EHOH2027

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E 501
ChainResidue
EPHE151
GSER443
HTYR153
HARG155

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA F 601
ChainResidue
FTHR39
FVAL40
FASP109
FGLN196
FHOH502

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO F 701
ChainResidue
FASN169
FPHE170
FSER302
FCYS303
FPHE465
FBXB1001

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO F 703
ChainResidue
FASN41
FTHR44
FGLU46
FHOH1546

site_idDC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BXB F 1001
ChainResidue
FMET124
FPHE170
FLEU173
FPHE292
FPHE296
FASP457
FPHE459
FEDO701
FHOH1400

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO F 501
ChainResidue
FPHE151
GTYR153
GARG155
HSER443

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO G 702
ChainResidue
EASN440
ESER443
FTYR153
FARG155
GPHE151

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA G 601
ChainResidue
GTHR39
GVAL40
GASP109
GGLN196
GHOH503

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO G 701
ChainResidue
GASN169
GSER302
GCYS303
GPHE465
GBXB1001

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO G 501
ChainResidue
GILE373
GALA375
GASP376
GGLY378

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO G 704
ChainResidue
GASN41
GTHR44
GILE48
GLEU108

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO G 705
ChainResidue
GASP98
GTYR101
GTYR203
GHOH534
GHOH951

site_idEC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BXB G 1001
ChainResidue
GMET124
GPHE170
GLEU173
GPHE292
GPHE296
GASP457
GPHE459
GHOH591
GEDO701
GHOH884

site_idEC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA H 601
ChainResidue
HTHR39
HVAL40
HASP109
HGLN196
HHOH501

site_idEC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO H 701
ChainResidue
HASN169
HPHE170
HSER302
HCYS303
HBXB1001

site_idEC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO H 703
ChainResidue
HASN41
HTHR44
HGLU46
HVAL47

site_idFC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO H 704
ChainResidue
HPHE18
HTYR101
HTYR203
HHOH1808

site_idFC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BXB H 1001
ChainResidue
HMET124
HPHE170
HLEU173
HTRP177
HPHE292
HPHE296
HASP457
HPHE459
HEDO701
HHOH1597

Functional Information from PROSITE/UniProt
site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGKSP
ChainResidueDetails
ALEU267-PRO274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AGLU268
BGLU268
CGLU268
DGLU268
EGLU268
FGLU268
GGLU268
HGLU268

site_idSWS_FT_FI2
Number of Residues8
DetailsACT_SITE: Nucleophile
ChainResidueDetails
ASER302
BSER302
CSER302
DSER302
ESER302
FSER302
GSER302
HSER302

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY245
BGLY245
CGLY245
DGLY245
EGLY245
FGLY245
GGLY245
HGLY245

site_idSWS_FT_FI4
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000250|UniProtKB:P20000
ChainResidueDetails
AASN169
BASN169
CASN169
DASN169
EASN169
FASN169
GASN169
HASN169

site_idSWS_FT_FI5
Number of Residues72
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P47738
ChainResidueDetails
ALYS35
ALYS56
ALYS61
ALYS142
ALYS351
ALYS366
ALYS409
ALYS411
ALYS434
BLYS35
BLYS56
BLYS61
BLYS142
BLYS351
BLYS366
BLYS409
BLYS411
BLYS434
CLYS35
CLYS56
CLYS61
CLYS142
CLYS351
CLYS366
CLYS409
CLYS411
CLYS434
DLYS35
DLYS56
DLYS61
DLYS142
DLYS351
DLYS366
DLYS409
DLYS411
DLYS434
ELYS35
ELYS56
ELYS61
ELYS142
ELYS351
ELYS366
ELYS409
ELYS411
ELYS434
FLYS35
FLYS56
FLYS61
FLYS142
FLYS351
FLYS366
FLYS409
FLYS411
FLYS434
GLYS35
GLYS56
GLYS61
GLYS142
GLYS351
GLYS366
GLYS409
GLYS411
GLYS434
HLYS35
HLYS56
HLYS61
HLYS142
HLYS351
HLYS366
HLYS409
HLYS411
HLYS434

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
ALYS192electrostatic stabiliser
AGLU268electrostatic stabiliser, proton acceptor, proton donor
ASER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
AGLU399electrostatic stabiliser

site_idMCSA2
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
BLYS192electrostatic stabiliser
BGLU268electrostatic stabiliser, proton acceptor, proton donor
BSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
BGLU399electrostatic stabiliser

site_idMCSA3
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
CLYS192electrostatic stabiliser
CGLU268electrostatic stabiliser, proton acceptor, proton donor
CSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
CGLU399electrostatic stabiliser

site_idMCSA4
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
DLYS192electrostatic stabiliser
DGLU268electrostatic stabiliser, proton acceptor, proton donor
DSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
DGLU399electrostatic stabiliser

site_idMCSA5
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
ELYS192electrostatic stabiliser
EGLU268electrostatic stabiliser, proton acceptor, proton donor
ESER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
EGLU399electrostatic stabiliser

site_idMCSA6
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
FLYS192electrostatic stabiliser
FGLU268electrostatic stabiliser, proton acceptor, proton donor
FSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
FGLU399electrostatic stabiliser

site_idMCSA7
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
GLYS192electrostatic stabiliser
GGLU268electrostatic stabiliser, proton acceptor, proton donor
GSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
GGLU399electrostatic stabiliser

site_idMCSA8
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
HLYS192electrostatic stabiliser
HGLU268electrostatic stabiliser, proton acceptor, proton donor
HSER302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
HGLU399electrostatic stabiliser

221051

PDB entries from 2024-06-12

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