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3IN5

Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion

Replaces:  3HED
Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP A 1
ChainResidue
AMG2
ATHR138
ATYR141
AARG144
AASP198
ALYS328
AHOH527
PDOC13
T8OG5
TDG6
AALA26
AASP107
AMET108
AASP109
AALA110
APHE111
ATYR112
ASER137

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
AATP1
AASP107
AMET108
AASP198
ALYS328

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 3
ChainResidue
AARG352
AVAL354
AILE357
PDT12

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ATP B 2
ChainResidue
BMG1
BALA26
BASP107
BMET108
BALA110
BPHE111
BTYR112
BSER137
BTHR138
BTYR141
BARG144
BASP198
BGLU199
BLYS328
QDOC13
U8OG5
UDG6

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1
ChainResidue
BATP2
BASP107
BMET108
BASP198

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 4
ChainResidue
BARG352
BVAL354
BILE357
QDT12

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

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PDB entries from 2024-07-24

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