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3ID5

Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0030515molecular_functionsnoRNA binding
A0031428cellular_componentbox C/D methylation guide snoRNP complex
A0032040cellular_componentsmall-subunit processome
B0000494biological_processbox C/D sno(s)RNA 3'-end processing
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0006338biological_processchromatin remodeling
B0006364biological_processrRNA processing
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008649molecular_functionrRNA methyltransferase activity
B0016740molecular_functiontransferase activity
B0031167biological_processrRNA methylation
B0031428cellular_componentbox C/D methylation guide snoRNP complex
B0032259biological_processmethylation
B1990259molecular_functionhistone H2AQ104 methyltransferase activity
C0001682biological_processtRNA 5'-leader removal
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0004526molecular_functionribonuclease P activity
C0005737cellular_componentcytoplasm
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0008033biological_processtRNA processing
C0019843molecular_functionrRNA binding
C0042254biological_processribosome biogenesis
C1990904cellular_componentribonucleoprotein complex
E0005515molecular_functionprotein binding
E0030515molecular_functionsnoRNA binding
E0031428cellular_componentbox C/D methylation guide snoRNP complex
E0032040cellular_componentsmall-subunit processome
F0000494biological_processbox C/D sno(s)RNA 3'-end processing
F0003723molecular_functionRNA binding
F0005515molecular_functionprotein binding
F0006338biological_processchromatin remodeling
F0006364biological_processrRNA processing
F0008033biological_processtRNA processing
F0008168molecular_functionmethyltransferase activity
F0008649molecular_functionrRNA methyltransferase activity
F0016740molecular_functiontransferase activity
F0031167biological_processrRNA methylation
F0031428cellular_componentbox C/D methylation guide snoRNP complex
F0032259biological_processmethylation
F1990259molecular_functionhistone H2AQ104 methyltransferase activity
G0001682biological_processtRNA 5'-leader removal
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0004526molecular_functionribonuclease P activity
G0005737cellular_componentcytoplasm
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0008033biological_processtRNA processing
G0019843molecular_functionrRNA binding
G0042254biological_processribosome biogenesis
G1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SAM B 301
ChainResidue
BTYR82
BTHR90
BGLU108
BPHE109
BASP133
BALA134
BASP153
BILE154
BGLN156

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SAM F 301
ChainResidue
FARG58
FTYR82
FTHR90
FGLU108
FPHE109
FASP133
FALA134
FASP153
FILE154
FGLN156

Functional Information from PROSITE/UniProt
site_idPS00566
Number of Residues15
DetailsFIBRILLARIN Fibrillarin signature. GKAYGVEFSpRvvRE
ChainResidueDetails
BGLY102-GLU116

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CdekkIPYvyVsSKkaLG
ChainResidueDetails
CCYS73-GLY90

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING:
ChainResidueDetails
BTHR89
BGLU108
BASP133
BASP153
FTHR89
FGLU108
FASP133
FASP153

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PDB entries from 2024-08-21

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