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3GIS

Crystal Structure of Na-free Thrombin in Complex with Thrombomodulin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005576cellular_componentextracellular region
A0006508biological_processproteolysis
A0007596biological_processblood coagulation
B0004252molecular_functionserine-type endopeptidase activity
B0005509molecular_functioncalcium ion binding
B0006508biological_processproteolysis
B0007596biological_processblood coagulation
C0004252molecular_functionserine-type endopeptidase activity
C0005576cellular_componentextracellular region
C0006508biological_processproteolysis
C0007596biological_processblood coagulation
D0004252molecular_functionserine-type endopeptidase activity
D0005509molecular_functioncalcium ion binding
D0006508biological_processproteolysis
D0007596biological_processblood coagulation
E0004252molecular_functionserine-type endopeptidase activity
E0005576cellular_componentextracellular region
E0006508biological_processproteolysis
E0007596biological_processblood coagulation
F0004252molecular_functionserine-type endopeptidase activity
F0005509molecular_functioncalcium ion binding
F0006508biological_processproteolysis
F0007596biological_processblood coagulation
X0004888molecular_functiontransmembrane signaling receptor activity
X0005509molecular_functioncalcium ion binding
X0016020cellular_componentmembrane
Y0004888molecular_functiontransmembrane signaling receptor activity
Y0005509molecular_functioncalcium ion binding
Y0016020cellular_componentmembrane
Z0004888molecular_functiontransmembrane signaling receptor activity
Z0005509molecular_functioncalcium ion binding
Z0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 16
ChainResidue
AALA1
AGLU1
AGLY1
ASER1
AHOH384

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 17
ChainResidue
AARG1
AASN1
AHOH111

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1
ChainResidue
BASP125
BARG126
BPHE232
BLYS235
APHE1

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2
ChainResidue
BARG101
BASN179
BHOH558

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 11
ChainResidue
BALA132
BGLU164
BARG165
BPRO166

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 13
ChainResidue
BTRP96
BARG97

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 14
ChainResidue
BARG101
BHOH515

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 16
ChainResidue
BHOH250
CARG14

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 3
ChainResidue
CPHE1
DASP125
DARG126
DLYS235
DHOH440
DHOH525

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 4
ChainResidue
DARG93
DARG101
DASN179

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 5
ChainResidue
DGLU164
DARG165
DPRO166
DHOH266

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 6
ChainResidue
AARG14
DLYS169
DARG175
DHOH350

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 16
ChainResidue
EALA1
EGLY1
ESER1
EHOH313

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 F 7
ChainResidue
FASP125
FARG126
FLYS235
FHOH291

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA X 1001
ChainResidue
XHOH148
XASP423
XILE424
XGLU426
XASN439
XLEU440
XTHR443

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA Y 1002
ChainResidue
YASP423
YILE424
YGLU426
YASN439
YLEU440
YTHR443

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA Z 1003
ChainResidue
ZHOH256
ZASP423
ZILE424
ZGLU426
ZASN439
ZLEU440
ZTHR443

Functional Information from PROSITE/UniProt
site_idPS00010
Number of Residues12
DetailsASX_HYDROXYL Aspartic acid and asparagine hydroxylation site. ChNlpgtFeCiC
ChainResidueDetails
XCYS437-CYS448

site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. LTAAHC
ChainResidueDetails
BLEU53-CYS58

site_idPS01186
Number of Residues15
DetailsEGF_2 EGF-like domain signature 2. CeCpeGYilddgfi.C
ChainResidueDetails
XCYS407-CYS421

site_idPS01187
Number of Residues24
DetailsEGF_CA Calcium-binding EGF-like domain signature. DiDECenggf.........Csgv....ChNlpgtFeC
ChainResidueDetails
XASP423-CYS446

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
XASN364
XASN391
YASN364
YASN391
ZASN364
ZASN391
FHIS57
FASP102
FALA195

site_idSWS_FT_FI2
Number of Residues3
DetailsCARBOHYD: N-linked (GlcNAc...) (complex) asparagine => ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19139490, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19838169, ECO:0000269|PubMed:873923
ChainResidueDetails
BASN60
DASN60
FASN60

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
BASP102
BHIS57

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
BALA195
BGLY193

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
DALA195
DGLY193

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
FALA195
FGLY193

site_idCSA13
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
BALA195
BGLY196

site_idCSA14
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
DALA195
DGLY196

site_idCSA15
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
FALA195
FGLY196

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
DASP102
DHIS57

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
FASP102
FHIS57

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
BASP102
BALA195
BHIS57

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
DASP102
DALA195
DHIS57

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
FASP102
FALA195
FHIS57

site_idCSA7
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
BASP102
BALA195
BGLY193
BHIS57

site_idCSA8
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
DASP102
DALA195
DGLY193
DHIS57

site_idCSA9
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
FASP102
FALA195
FGLY193
FHIS57

222624

PDB entries from 2024-07-17

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