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3EPP

Crystal structure of mRNA cap guanine-N7 methyltransferase (RNMT) in complex with sinefungin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0006370biological_process7-methylguanosine mRNA capping
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0006370biological_process7-methylguanosine mRNA capping
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SFG A 401
ChainResidue
ALYS17
APHE122
AVAL123
ATYR126
AMET137
AHOH427
AHOH444
AGLY42
AGLY44
AASP64
AILE65
AASP98
ASER99
ASER100
AGLN121

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE SFG B 401
ChainResidue
BLYS17
BGLY42
BGLY44
BASP64
BILE65
BASP98
BSER99
BGLN121
BPHE122
BVAL123
BTYR126
BMET137
BHOH430
BHOH474

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00895","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00895","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"27422871","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3BGV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5E9J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5E9W","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27422871","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3BGV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5E9J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5E9W","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues12
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00895","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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