Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3DGD

Crystal structure of the F87M/L110M mutant of human transthyretin at pH 4.6

Replaces: 3CYK

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0001523	biological_process	retinoid metabolic process
A	0003105	biological_process	negative regulation of glomerular filtration
A	0005179	molecular_function	hormone activity
A	0005515	molecular_function	protein binding
A	0005576	cellular_component	extracellular region
A	0005615	cellular_component	extracellular space
A	0005737	cellular_component	cytoplasm
A	0006144	biological_process	purine nucleobase metabolic process
A	0007603	biological_process	phototransduction, visible light
A	0032991	cellular_component	protein-containing complex
A	0035578	cellular_component	azurophil granule lumen
A	0042562	molecular_function	hormone binding
A	0042802	molecular_function	identical protein binding
A	0044877	molecular_function	protein-containing complex binding
A	0070062	cellular_component	extracellular exosome
A	0140313	molecular_function	molecular sequestering activity
B	0001523	biological_process	retinoid metabolic process
B	0003105	biological_process	negative regulation of glomerular filtration
B	0005179	molecular_function	hormone activity
B	0005515	molecular_function	protein binding
B	0005576	cellular_component	extracellular region
B	0005615	cellular_component	extracellular space
B	0005737	cellular_component	cytoplasm
B	0006144	biological_process	purine nucleobase metabolic process
B	0007603	biological_process	phototransduction, visible light
B	0032991	cellular_component	protein-containing complex
B	0035578	cellular_component	azurophil granule lumen
B	0042562	molecular_function	hormone binding
B	0042802	molecular_function	identical protein binding
B	0044877	molecular_function	protein-containing complex binding
B	0070062	cellular_component	extracellular exosome
B	0140313	molecular_function	molecular sequestering activity
C	0001523	biological_process	retinoid metabolic process
C	0003105	biological_process	negative regulation of glomerular filtration
C	0005179	molecular_function	hormone activity
C	0005515	molecular_function	protein binding
C	0005576	cellular_component	extracellular region
C	0005615	cellular_component	extracellular space
C	0005737	cellular_component	cytoplasm
C	0006144	biological_process	purine nucleobase metabolic process
C	0007603	biological_process	phototransduction, visible light
C	0032991	cellular_component	protein-containing complex
C	0035578	cellular_component	azurophil granule lumen
C	0042562	molecular_function	hormone binding
C	0042802	molecular_function	identical protein binding
C	0044877	molecular_function	protein-containing complex binding
C	0070062	cellular_component	extracellular exosome
C	0140313	molecular_function	molecular sequestering activity
D	0001523	biological_process	retinoid metabolic process
D	0003105	biological_process	negative regulation of glomerular filtration
D	0005179	molecular_function	hormone activity
D	0005515	molecular_function	protein binding
D	0005576	cellular_component	extracellular region
D	0005615	cellular_component	extracellular space
D	0005737	cellular_component	cytoplasm
D	0006144	biological_process	purine nucleobase metabolic process
D	0007603	biological_process	phototransduction, visible light
D	0032991	cellular_component	protein-containing complex
D	0035578	cellular_component	azurophil granule lumen
D	0042562	molecular_function	hormone binding
D	0042802	molecular_function	identical protein binding
D	0044877	molecular_function	protein-containing complex binding
D	0070062	cellular_component	extracellular exosome
D	0140313	molecular_function	molecular sequestering activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN A 128

Chain	Residue
A	HIS31
A	ASP74

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN A 129

Chain	Residue
A	CYS10
A	HIS56

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN A 130

Chain	Residue
A	HIS88
A	HIS90
A	GLU92

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ACT A 131

Chain	Residue
A	GLU92
B	TRP41
B	LYS70
B	GLU92
A	TRP41
A	LYS70

site_id	AC5
Number of Residues	10
Details	BINDING SITE FOR RESIDUE ACT A 132

Chain	Residue
A	THR75
A	TRP79
A	PRO86
A	MET87
A	HIS88
A	HIS90
A	ALA91
A	SER112
A	PRO113
A	TYR116

site_id	AC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN B 128

Chain	Residue
B	CYS10
B	HIS56

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN B 129

Chain	Residue
B	HIS31
B	ASP74

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN B 130

Chain	Residue
B	HIS88
B	HIS90
B	GLU92

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT B 131

Chain	Residue
B	HIS31
B	GLY47

site_id	BC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE ACT B 132

Chain	Residue
B	THR75
B	TRP79
B	MET87
B	HIS88
B	HIS90
B	ALA91
B	SER112
B	PRO113
B	TYR116

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ACT B 133

Chain	Residue
B	HIS31
B	PRO43
B	PHE44
B	ALA45
B	SER46

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN C 128

Chain	Residue
C	HIS88
C	HIS90
C	GLU92

site_id	BC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN C 129

Chain	Residue
C	CYS10
C	HIS56

site_id	BC5
Number of Residues	10
Details	BINDING SITE FOR RESIDUE ACT C 130

Chain	Residue
C	THR75
C	TRP79
C	PRO86
C	MET87
C	HIS88
C	HIS90
C	ALA91
C	SER112
C	PRO113
C	TYR116

site_id	BC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ACT C 131

Chain	Residue
C	PRO86
C	MET87
C	TYR114
D	THR96
D	ASP99
D	TYR105

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ACT C 132

Chain	Residue
C	GLY57
C	LEU58
C	THR59
C	THR60
C	GLU63

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN D 128

Chain	Residue
D	HIS31
D	ASP74

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN D 129

Chain	Residue
D	CYS10
D	HIS56

site_id	CC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ZN D 130

Chain	Residue
D	GLU62

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN D 131

Chain	Residue
D	HIS88
D	HIS90
D	GLU92

site_id	CC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE ACT D 132

Chain	Residue
D	THR75
D	TRP79
D	MET87
D	HIS88
D	HIS90
D	ALA91
D	SER112
D	PRO113
D	TYR116

site_id	CC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ACT D 133

Chain	Residue
D	HIS31
D	PRO43
D	ALA45
D	SER46

site_id	CC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ACT D 134

Chain	Residue
C	LYS35
C	TRP41
D	PHE33
D	TRP41
D	LYS70

site_id	CC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ACT C 133

Chain	Residue
C	LYS70
D	TRP41
D	LYS70
C	TRP41

site_id	CC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ZN A 133

Chain	Residue
A	GLU61

site_id	CC8
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ZN B 134

Chain	Residue
B	GLU62

site_id	CC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN C 134

Chain	Residue
C	HIS31
C	ASP74

site_id	DC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 135

Chain	Residue
B	GLU42
B	PHE44
B	GLU63

site_id	DC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL B 136

Chain	Residue
A	ASP39
B	PHE33
B	TRP41
B	LYS70
B	GLU72

site_id	DC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL D 135

Chain	Residue
D	HIS31
D	GLY47

Functional Information from PROSITE/UniProt

site_id	PS00768
Number of Residues	16
Details	TRANSTHYRETIN_1 Transthyretin signature 1. KVLDavrGsPAinVaV

Chain	Residue	Details
A	LYS15-VAL30

site_id	PS00769
Number of Residues	13
Details	TRANSTHYRETIN_2 Transthyretin signature 2. YTIAamLSPYSYS

Chain	Residue	Details
A	TYR105-SER117

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"11418763","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1ICT","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	4
Details	Modified residue: {"description":"Sulfocysteine","evidences":[{"source":"PubMed","id":"17175208","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2H4E","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	4
Details	Modified residue: {"description":"4-carboxyglutamate; in a patient with Moyamoya disease","evidences":[{"source":"PubMed","id":"18221012","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P02767","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	4
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"16335952","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19167329","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)