Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3CMD

Crystal structure of peptide deformylase from VRE-E.faecium

Functional Information from GO Data
ChainGOidnamespacecontents
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0046872molecular_functionmetal ion binding
B0006412biological_processtranslation
B0016787molecular_functionhydrolase activity
B0042586molecular_functionpeptide deformylase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE A 188
ChainResidue
AGLN65
ACYS114
AHIS157
AHIS161

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE B 188
ChainResidue
BGLN65
BCYS114
BHIS157
BHIS161

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA A 189
ChainResidue
AHIS157
AGLY113

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 190
ChainResidue
BLYS148
BGLU151

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA B 191
ChainResidue
BGLY113

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 192
ChainResidue
AASP5
BGLU181

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 193
ChainResidue
BGLU10
BTYR168

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA B 194
ChainResidue
BSER100
BHIS101
BARG146

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA A 190
ChainResidue
AGLU36

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MLI A 191
ChainResidue
AGLY58
AGLY60
AGLN65
AGLY113
ACYS114
ALEU115
AHIS157
AGLU158
AHIS161

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MLI B 195
ChainResidue
BGLY58
BGLY60
BGLN65
BGLY113
BCYS114
BLEU115
BGLU158

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MLI A 192
ChainResidue
ASER23
AASP30
ALYS70
BLYS130
BARG146

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MLI A 193
ChainResidue
AGLU10
AARG16
ATYR168

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
AGLY60
AGLU158
AGLN65
ALEU115

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
BGLY60
BGLU158
BGLN65
BLEU115

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon