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3CDW

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0003968molecular_functionRNA-dependent RNA polymerase activity
A0006351biological_processDNA-templated transcription
A0039694biological_processviral RNA genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 469
ChainResidue
ATYR314
ALYS315
AGLY316

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 470
ChainResidue
ALYS220
AHIS466
AHIS468

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 471
ChainResidue
AGLU35
AHIS399
ALYS436

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 472
ChainResidue
ACYS212
AASP213

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 475
ChainResidue
AARG163
ALYS167
AARG174

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 476
ChainResidue
APRO20
ASER21
ALYS22

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 477
ChainResidue
ALYS22
AARG44

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 478
ChainResidue
AASN425
AGLY426
AGLU427
AHIS428
AGLU429

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 479
ChainResidue
ASER132
ALYS133
ALYS134

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 480
ChainResidue
ATHR68
AALA247

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 481
ChainResidue
AHIS69

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE POP A 482
ChainResidue
ALYS38
ALEU162
AARG163
ASER164
ALYS167
AARG174
ALYS376

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 483
ChainResidue
AHIS199
ASER295
ATYR327

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 484
ChainResidue
AGLY290
ACYS291
ATHR294
ASER295

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 485
ChainResidue
ALYS38
AASP397
ASER401

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 486
ChainResidue
AGLN384
ATYR385
AARG455
ALEU459

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 487
ChainResidue
ASER452
ATHR453
AARG456

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 488
ChainResidue
AARG416
APRO449
AALA450
ATHR453

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 489
ChainResidue
ACYS212
ATYR327

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL A 490
ChainResidue
AASP397

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 491
ChainResidue
ATHR370
ATYR378
AARG380
HPRO14

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 492
ChainResidue
AASN151
ALYS261
AASN264

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 493
ChainResidue
APHE246
AALA247
AILE266
AASP267
ACYS270
AASN271

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 494
ChainResidue
AILE3
AILE6
AGLU55
ALYS279
ATYR281

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 495
ChainResidue
ALEU43
AARG44
ASER45
AGLU55
ATYR276
AARG277

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 496
ChainResidue
APHE232
AASP233
AASP330
AASP359
ATHR373
APHE374

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 497
ChainResidue
AILE58
APHE59
ALYS61
ATYR62
AALA239

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 498
ChainResidue
ALYS61
AARG174
AGLY236

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 499
ChainResidue
ALYS10
AGLY316
AASP318
ATYR335
ATRP337

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 500
ChainResidue
ALEU107
AARG188
ATYR195
AHIS199
ASER292
AGLY293

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 501
ChainResidue
AHIS31
AGLY36
AARG403
ATRP404

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 502
ChainResidue
AALA381
AASP382
AGLU383
AHIS390
HLYS10

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 503
ChainResidue
AGLY426
AGLU427
AHIS428
APHE451

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
AALA12
AGLY13
AILE339

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
ALYS140
ALYS147
AGLU346
ALYS349

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 506
ChainResidue
ATHR114
ASER115

site_idEC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 507
ChainResidue
AASP47
APRO48
AARG49

site_idEC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 508
ChainResidue
AGLU39
APRO40
ATRP404

site_idEC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 509
ChainResidue
APRO386
ATHR447
HPRO7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsSITE: Cleavage; by protease 3C => ECO:0000250|UniProtKB:P03301
ChainResidueDetails
HGLN22

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: O-(5'-phospho-RNA)-tyrosine => ECO:0000250|UniProtKB:P03300
ChainResidueDetails
HTYR3

226707

PDB entries from 2024-10-30

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