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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3CDW

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0003968	molecular_function	RNA-dependent RNA polymerase activity
A	0006351	biological_process	DNA-templated transcription
A	0039694	biological_process	viral RNA genome replication

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 469

Chain	Residue
A	TYR314
A	LYS315
A	GLY316

site_id	AC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 470

Chain	Residue
A	LYS220
A	HIS466
A	HIS468

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 471

Chain	Residue
A	GLU35
A	HIS399
A	LYS436

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 472

Chain	Residue
A	CYS212
A	ASP213

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 475

Chain	Residue
A	ARG163
A	LYS167
A	ARG174

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ACT A 476

Chain	Residue
A	PRO20
A	SER21
A	LYS22

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT A 477

Chain	Residue
A	LYS22
A	ARG44

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ACT A 478

Chain	Residue
A	ASN425
A	GLY426
A	GLU427
A	HIS428
A	GLU429

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ACT A 479

Chain	Residue
A	SER132
A	LYS133
A	LYS134

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT A 480

Chain	Residue
A	THR68
A	ALA247

site_id	BC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ACT A 481

Chain	Residue
A	HIS69

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE POP A 482

Chain	Residue
A	LYS38
A	LEU162
A	ARG163
A	SER164
A	LYS167
A	ARG174
A	LYS376

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 483

Chain	Residue
A	HIS199
A	SER295
A	TYR327

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 484

Chain	Residue
A	GLY290
A	CYS291
A	THR294
A	SER295

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 485

Chain	Residue
A	LYS38
A	ASP397
A	SER401

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 486

Chain	Residue
A	GLN384
A	TYR385
A	ARG455
A	LEU459

site_id	BC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 487

Chain	Residue
A	SER452
A	THR453
A	ARG456

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 488

Chain	Residue
A	ARG416
A	PRO449
A	ALA450
A	THR453

site_id	CC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL A 489

Chain	Residue
A	CYS212
A	TYR327

site_id	CC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE GOL A 490

Chain	Residue
A	ASP397

site_id	CC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 491

Chain	Residue
A	THR370
A	TYR378
A	ARG380
H	PRO14

site_id	CC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 492

Chain	Residue
A	ASN151
A	LYS261
A	ASN264

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 493

Chain	Residue
A	PHE246
A	ALA247
A	ILE266
A	ASP267
A	CYS270
A	ASN271

site_id	CC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 494

Chain	Residue
A	ILE3
A	ILE6
A	GLU55
A	LYS279
A	TYR281

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 495

Chain	Residue
A	LEU43
A	ARG44
A	SER45
A	GLU55
A	TYR276
A	ARG277

site_id	CC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 496

Chain	Residue
A	PHE232
A	ASP233
A	ASP330
A	ASP359
A	THR373
A	PHE374

site_id	CC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 497

Chain	Residue
A	ILE58
A	PHE59
A	LYS61
A	TYR62
A	ALA239

site_id	DC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 498

Chain	Residue
A	LYS61
A	ARG174
A	GLY236

site_id	DC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 499

Chain	Residue
A	LYS10
A	GLY316
A	ASP318
A	TYR335
A	TRP337

site_id	DC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 500

Chain	Residue
A	LEU107
A	ARG188
A	TYR195
A	HIS199
A	SER292
A	GLY293

site_id	DC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 501

Chain	Residue
A	HIS31
A	GLY36
A	ARG403
A	TRP404

site_id	DC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 502

Chain	Residue
A	ALA381
A	ASP382
A	GLU383
A	HIS390
H	LYS10

site_id	DC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 503

Chain	Residue
A	GLY426
A	GLU427
A	HIS428
A	PHE451

site_id	DC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 504

Chain	Residue
A	ALA12
A	GLY13
A	ILE339

site_id	DC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 505

Chain	Residue
A	LYS140
A	LYS147
A	GLU346
A	LYS349

site_id	DC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL A 506

Chain	Residue
A	THR114
A	SER115

site_id	EC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 507

Chain	Residue
A	ASP47
A	PRO48
A	ARG49

site_id	EC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 508

Chain	Residue
A	GLU39
A	PRO40
A	TRP404

site_id	EC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 509

Chain	Residue
A	PRO386
A	THR447
H	PRO7

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	SITE: Cleavage; by protease 3C => ECO:0000250\|UniProtKB:P03301

Chain	Residue	Details
H	GLN22

site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: O-(5'-phospho-RNA)-tyrosine => ECO:0000250\|UniProtKB:P03300

Chain	Residue	Details
H	TYR3

218853

PDB entries from 2024-04-24

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