2ZO9
Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal ion preference
Functional Information from GO Data
Chain | GOid | namespace | contents |
B | 0004112 | molecular_function | cyclic-nucleotide phosphodiesterase activity |
B | 0004115 | molecular_function | 3',5'-cyclic-AMP phosphodiesterase activity |
B | 0006071 | biological_process | glycerol metabolic process |
B | 0008889 | molecular_function | glycerophosphodiester phosphodiesterase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0046872 | molecular_function | metal ion binding |
C | 0004112 | molecular_function | cyclic-nucleotide phosphodiesterase activity |
C | 0004115 | molecular_function | 3',5'-cyclic-AMP phosphodiesterase activity |
C | 0006071 | biological_process | glycerol metabolic process |
C | 0008889 | molecular_function | glycerophosphodiester phosphodiesterase activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FE2 B 275 |
Chain | Residue |
B | ASP8 |
B | HIS10 |
B | ASP50 |
B | HIS197 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FE2 B 276 |
Chain | Residue |
B | ASP50 |
B | ASN80 |
B | HIS156 |
B | HIS195 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FE2 C 275 |
Chain | Residue |
C | HIS10 |
C | ASP50 |
C | HIS197 |
C | ASP8 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FE2 C 276 |
Chain | Residue |
C | ASP50 |
C | ASN80 |
C | HIS156 |
C | HIS195 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MLI B 277 |
Chain | Residue |
B | ASP8 |
B | HIS10 |
B | ASP50 |
B | ASN80 |
B | HIS81 |
B | HIS195 |
B | HIS197 |
site_id | AC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MLI C 277 |
Chain | Residue |
C | ASP8 |
C | HIS10 |
C | ASP50 |
C | ASN80 |
C | HIS81 |
C | ILE170 |
C | HIS195 |
C | HIS197 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18678932, ECO:0000305|PubMed:17306828, ECO:0000305|PubMed:18831553, ECO:0007744|PDB:2ZO9, ECO:0007744|PDB:2ZOA |
Chain | Residue | Details |
B | ASP8 | |
C | ASP50 | |
C | ASN80 | |
C | HIS156 | |
C | HIS195 | |
C | HIS197 | |
B | HIS10 | |
B | ASP50 | |
B | ASN80 | |
B | HIS156 | |
B | HIS195 | |
B | HIS197 | |
C | ASP8 | |
C | HIS10 |