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2Y3P

Crystal structure of N-terminal domain of GyrA with the antibiotic simocyclinone D8

Replaces:  2WL2
Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006259biological_processDNA metabolic process
B0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE SM8 A 901
ChainResidue
ALEU41
AALA175
AHOH2044
AHOH2045
AHOH2046
BVAL28
BARG32
BARG47
BHIS78
BHIS80
BASP82
ALYS42
BMG951
BMG952
AHIS45
AARG91
AMET92
ALEU102
AASN165
AASN169
AGLY170

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 951
ChainResidue
BARG121
BSM8901

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 952
ChainResidue
BSM8901

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE SM8 B 901
ChainResidue
AVAL28
AARG32
AARG47
AHIS78
AHIS80
AMG951
AMG952
BLEU41
BHIS45
BARG91
BMET92
BASN165
BASN169
BGLY170
BSER172
BHOH2029
BHOH2049
BHOH2050

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG B 951
ChainResidue
ASM8901

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG B 952
ChainResidue
ASM8901
BHOH2008

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897
ChainResidueDetails
ATYR122
BTYR122

223532

PDB entries from 2024-08-07

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