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2XXZ

Crystal structure of the human JMJD3 jumonji domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0046872molecular_functionmetal ion binding
A0071557biological_processhistone H3-K27 demethylation
A0071558molecular_functionhistone H3-tri/di-methyl-lysine-27 demethylase activity
B0005634cellular_componentnucleus
B0046872molecular_functionmetal ion binding
B0071557biological_processhistone H3-K27 demethylation
B0071558molecular_functionhistone H3-tri/di-methyl-lysine-27 demethylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI A 2494
ChainResidue
AHIS1387
AGLU1389
AHOH2098
AHOH2103
A8XQ3001

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NI A 2500
ChainResidue
AHOH2060
BHOH2150
AHOH2013
AHOH2015
AHOH2054
AHOH2059

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI B 2500
ChainResidue
BHIS1387
BGLU1389
BHOH2083
BHOH2155
B8XQ3001

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 2495
ChainResidue
AGLU1287
BGLU1188
BHOH2011
BHOH2012
BHOH2013

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2496
ChainResidue
AILE1185
ATYR1186
BGLN1200
BHOH2020

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 2497
ChainResidue
AASP1204
AGLN1489
AHOH2163
AHOH2164
BPRO1183
BSER1184
BPHE1201

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 2498
ChainResidue
AASP1330
AMET1370
AHOH2015

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 2501
ChainResidue
AARG1191
BLYS1190
BARG1191
BTYR1497

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2499
ChainResidue
ASER1227
ATHR1228
AGLY1401
AASN1476

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 8XQ A 3001
ChainResidue
ATYR1376
ALYS1378
ATHR1384
AHIS1387
AGLU1389
AASN1397
ATRP1407
AILE1461
AHIS1467
AASN1477
AHOH2103
ANI2494

site_idBC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 8XQ B 3001
ChainResidue
BTYR1376
BLYS1378
BTHR1384
BHIS1387
BGLU1389
BASN1397
BTRP1407
BHIS1467
BHOH2091
BHOH2155
BNI2500

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"O14607","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

251422

PDB entries from 2026-04-01

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