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2XE4

Structure of Oligopeptidase B from Leishmania major

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006508biological_processproteolysis
A0008236molecular_functionserine-type peptidase activity
A0016491molecular_functionoxidoreductase activity
A0070012molecular_functionoligopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1732
ChainResidue
APRO591
AASP592
APHE594
AGLU650
ATYR651
APRO652
APGR1766
AHOH2610
AHOH2710

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1733
ChainResidue
AHIS340
AVAL341
APHE385
ALYS386
AALA387
APGR1759

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1734
ChainResidue
AGLY452
AHIS480
AASP516
AARG726
ALEU727
ALEU728
AHOH2479
AHOH2682

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1735
ChainResidue
ALYS595
AASN653
AASN685
AHIS720
APGR1767

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1736
ChainResidue
APHE698
AHOH2720

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1737
ChainResidue
AGLN437
AHIS439
AHOH2683

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1738
ChainResidue
ASER311
AVAL446
AARG447
AGLU448
AVAL449
AHOH2362
AHOH2684
AHOH2685

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1739
ChainResidue
ATHR466
AALA555
AGLU558

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1740
ChainResidue
AARG547
ASER551
AMET589
AASP635
ATYR636
AHOH2546
AHOH2590
AHOH2591

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1741
ChainResidue
ALYS299
ATYR543
ATRP622
AASN627
ATYR633
AHOH2587
AHOH2686
AHOH2687

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGR A 1742
ChainResidue
AGLU574
AGLY575
AGLY600
AGLN713
APGO1743
AHOH2688
AHOH2706

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO A 1743
ChainResidue
AGLN510
ATYR514
AGLU574
ALEU598
ASER710
APGR1742
APGR1777

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1744
ChainResidue
AHIS308
AGLY309
ASER311
AHIS312
AASP454
AHOH2441

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1745
ChainResidue
AALA700
ALYS701
AARG703
APHE706
AHOH2162
AHOH2656

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PGR A 1746
ChainResidue
ATRP50
AARG52
AASP53
APGR1775
APGR1780
AHOH2091
AHOH2691
AHOH2700

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1747
ChainResidue
AARG527
AALA535
AGLY540
AHOH2491
AHOH2692

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1748
ChainResidue
AASP155
AMET157
APHE698
ALYS701
AHOH2195
AHOH2693

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1749
ChainResidue
AGLY369
AARG462
APRO474
ASER476
AHIS525
AHOH2716

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1750
ChainResidue
AALA88
AGLU89
ASER92
AGLY451
AHOH2674

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1751
ChainResidue
ATYR103
ATYR110
AVAL159
ALEU411

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1752
ChainResidue
AILE142
AASP143
ALYS186
AHOH2694

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1753
ChainResidue
AALA259
ALEU411
AHOH2152
AHOH2204
AHOH2437

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1754
ChainResidue
ATHR262
AASN263
ALEU282

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1755
ChainResidue
AGLY300
AVAL301
AASN318
AGLY320
AGLY321
AHOH2357

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1756
ChainResidue
AARG302
AASP304
ALEU316
AHIS325
AHOH2385

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGR A 1757
ChainResidue
AASP261
AASP454
AASN457
ALYS481
AHOH2311
AHOH2442
AHOH2695

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1758
ChainResidue
AASP281
AARG283
AARG332
ATHR427
AHOH2696

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1759
ChainResidue
AHIS312
AILE329
AHIS340
AGLU448
AGOL1733
AHOH2697

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1760
ChainResidue
AALA378
ASER380
ATHR389

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1761
ChainResidue
ATYR105
ATHR262
ALEU411
AGLU412
ATYR413

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1762
ChainResidue
AASP433
ASER440
AARG441
ATHR442

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1763
ChainResidue
ATHR290
ASER440
AARG441

site_idDC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGR A 1764
ChainResidue
AMET503
AASP504
AGLN506
AILE523
APGR1779
AHOH2516
AHOH2699

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1765
ChainResidue
AARG447
ASER508
AILE509
APGR1779
AHOH2193

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1766
ChainResidue
APRO568
ASER569
APHE594
ALYS595
AGOL1732
AHOH2567

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGR A 1767
ChainResidue
AARG75
AASN653
AASN684
AASN685
AGLU686
AHIS720
AGOL1735

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGR A 1768
ChainResidue
AVAL104
AGLU415

site_idEC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1769
ChainResidue
AASP304
AGLN306
AHOH2393

site_idEC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1770
ChainResidue
ATYR103
ASER408
AGLN409
AHOH2146
AHOH2159
AHOH2433

site_idEC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGR A 1771
ChainResidue
AALA17
ALYS19
ATRP50
AHOH2700
AHOH2701
AHOH2702
AHOH2703

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1772
ChainResidue
AARG56
AILE62
AMET693
AHOH2088
AHOH2650

site_idEC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGR A 1773
ChainResidue
AARG295
AGLU319

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1774
ChainResidue
AARG463
APHE464
APHE559
AHOH2704

site_idEC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1775
ChainResidue
AARG52
AASP54
APGR1746
APGR1780

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1776
ChainResidue
AGLY333
AGLN334
ALYS445
AVAL446
AGLU448
AHOH2705

site_idFC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PGR A 1777
ChainResidue
AGLN657
ASER699
AGLU709
ASER710
AGLN713
APGO1743
AHOH2614
AHOH2706

site_idFC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1778
ChainResidue
AASP32
AGLY34
APRO35
AASN249
ATRP622
AHOH2707

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1779
ChainResidue
AGLN506
ASER508
APGR1764
APGR1765
APO41793

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1780
ChainResidue
AASP53
AASP55
APGR1746
APGR1775

site_idFC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1781
ChainResidue
ALYS284
AGLU397
APHE432
AARG441

site_idFC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1782
ChainResidue
AGLU650
AASP683
AASN684
AASN685
AHOH2710

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGR A 1783
ChainResidue
AASP54
AARG56
AGLU222
APRO616
ATRP668

site_idFC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGR A 1784
ChainResidue
ALEU638
AASN645
AVAL646
AARG647
AHOH2711
AHOH2712

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1785
ChainResidue
AASN66
ALYS69
AGLN73

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1786
ChainResidue
ALEU342
AASP344
AALA387

site_idGC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1787
ChainResidue
AASP281
ALYS284
AHIS288
AGLU292

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1788
ChainResidue
AARG283
ALYS459
AVAL460
AHOH2713

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGR A 1789
ChainResidue
AGLU246
AHOH2714
AHOH2715

site_idGC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGR A 1790
ChainResidue
AALA368
ALEU532
AHOH2716
AHOH2717

site_idGC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 1791
ChainResidue
ATYR496
AARG576
ASER577
AHIS697
APHE698
APO41793
AHOH2719
AHOH2720
BVAL3
BRGL4

site_idGC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 1792
ChainResidue
AGLY201
ALYS220
AASP221
ALEU224
AHOH2250

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1793
ChainResidue
ATYR494
ATYR496
ALEU501
AMET503
AARG576
APGR1779
APO41791

site_idGC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1794
ChainResidue
ATRP208
AHOH2204
AHOH2309

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1795
ChainResidue
AILE91
AILE94
AHOH2131
AHOH2132
AHOH2138

site_idHC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1796
ChainResidue
ALYS121
AHOH2173
AHOH2194

site_idHC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 1797
ChainResidue
AASP174
ASER176
AASN178
AVAL180
AHOH2216
AHOH2226

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1798
ChainResidue
AHIS308
AHIS312
APHE385

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1799
ChainResidue
AGLU63
AASN66
AHOH2093
AHOH2094

site_idHC6
Number of Residues25
DetailsBINDING SITE FOR CHAIN B OF RESIDUES 1 TO 4
ChainResidue
AGLU226
ASER253
ATYR496
ATYR499
ALEU501
ASER577
AALA578
APHE603
AMET610
ALEU617
AGLU621
AARG664
AVAL665
AHIS697
APO41791
AHOH2266
AHOH2267
AHOH2302
AHOH2303
AHOH2580
AHOH2622
AHOH2678
AHOH2679
AHOH2680
AHOH2681

Functional Information from PROSITE/UniProt
site_idPS00708
Number of Residues31
DetailsPRO_ENDOPEP_SER Prolyl endopeptidase family serine active site. DfiaAaefLvnaklttpsqlaceGrSaGGLL
ChainResidueDetails
AASP552-LEU582

224931

PDB entries from 2024-09-11

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