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2X5O

Discovery of Novel 5-Benzylidenerhodanine- and 5-Benzylidene- thiazolidine-2,4-dione Inhibitors of MurD Ligase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008360biological_processregulation of cell shape
A0008764molecular_functionUDP-N-acetylmuramoylalanine-D-glutamate ligase activity
A0009058biological_processbiosynthetic process
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0016881molecular_functionacid-amino acid ligase activity
A0042802molecular_functionidentical protein binding
A0051301biological_processcell division
A0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE VSV A 500
ChainResidue
AASP35
AALA414
ASER415
AASN421
APHE422
AHOH2526
AHOH2527
AHOH2528
AHOH2529
AHOH2530
AHOH2531
ATHR36
AHOH2532
AARG37
ASER71
APRO72
AGLY73
APHE161
AHIS183
ALYS348

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE AZI A 1443
ChainResidue
AASP417
AGLN418
APHE419
ALYS420

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1448
ChainResidue
AASN113
AGLY114
ALYS115
ASER116
ATHR117
AARG302
AHOH2533
AHOH2534

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1450
ChainResidue
AHIS309
AASN310
AHIS439

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO3 A 1451
ChainResidue
AGLY14
ALEU15
ATHR16
AHOH2033
AHOH2075

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1453
ChainResidue
AALA64
AHIS309
AASN310
AHOH2069

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1459
ChainResidue
ALEU191
AGLN192
AGLU253
ALYS254

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1505
ChainResidue
AASN363

Functional Information from PROSITE/UniProt
site_idPS00012
Number of Residues16
DetailsPHOSPHOPANTETHEINE Phosphopantetheine attachment site. GSNGKSTVTTLVGEMA
ChainResidueDetails
AGLY111-ALA126

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY111

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 317
ChainResidueDetails
ALYS115activator, attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase electrophilicity
AASN138electrostatic stabiliser, hydrogen bond donor, steric role
AHIS183hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, steric role

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PDB entries from 2024-07-17

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