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2V4R

Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DGT A 404
ChainResidue
APHE9
AASP106
ALYS160
ACA1000
ACA1001
AHOH2004
AHOH2088
AHOH2089
AHOH2090
TDC4
TM1G5
AASP10
ATYR11
APHE12
ATYR13
AALA45
ATHR46
ATYR49
AARG52

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 1000
ChainResidue
AASP8
APHE9
AASP106
ADGT404
ACA1001

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 1001
ChainResidue
AASP8
AASP106
AGLU107
ADGT404
ACA1000
AHOH2089
AHOH2091

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 1002
ChainResidue
AALA182
AILE187
AHOH2050
PHOH2020

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU107

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP8
AASP106

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR13

222926

PDB entries from 2024-07-24

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