Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OD7

Crystal Structure of yHst2 bound to the intermediate analogue ADP-HPD, and and aceylated H4 peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 701
ChainResidue
ACYS143
ACYS146
ACYS170
ACYS173

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE A1R A 1001
ChainResidue
AARG45
AGLU64
AGLN115
AGLY223
ATHR224
ASER225
AVAL228
AASN248
AGLN268
ATYR269
ASER270
AHOH1023
AHOH1024
AHOH1026
AHOH1028
AHOH1063
AHOH1074
BHIS18
AGLY32
AALA33
AGLY34
ATHR37
APHE44

Functional Information from PROSITE/UniProt
site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:20726530
ChainResidueDetails
AHIS135

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:14502267, ECO:0000269|PubMed:15150415
ChainResidueDetails
AGLY32
AGLN115
AGLY223
AASN248
ASER270

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:14502267, ECO:0000269|PubMed:14604530, ECO:0000269|PubMed:15150415, ECO:0000269|PubMed:17289592
ChainResidueDetails
ACYS143
ACYS146
ACYS170
ACYS173

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:22814378
ChainResidueDetails
ASER2

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 240
ChainResidueDetails
APRO42hydrogen bond acceptor, steric role
AASP43hydrogen bond acceptor, hydrogen bond donor, steric role
APHE44steric role, van der waals interaction
AARG45electrostatic stabiliser, hydrogen bond donor
AASN116activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, increase nucleophilicity
AASP118activator, hydrogen bond acceptor
AHIS135hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon