2J87
Structure of vaccinia virus thymidine kinase in complex with dTTP: insights for drug design
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004797 | molecular_function | thymidine kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0009157 | biological_process | deoxyribonucleoside monophosphate biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
A | 0046104 | biological_process | thymidine metabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0071897 | biological_process | DNA biosynthetic process |
B | 0004797 | molecular_function | thymidine kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0009157 | biological_process | deoxyribonucleoside monophosphate biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
B | 0046104 | biological_process | thymidine metabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0071897 | biological_process | DNA biosynthetic process |
C | 0004797 | molecular_function | thymidine kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0009157 | biological_process | deoxyribonucleoside monophosphate biosynthetic process |
C | 0016301 | molecular_function | kinase activity |
C | 0046104 | biological_process | thymidine metabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0071897 | biological_process | DNA biosynthetic process |
D | 0004797 | molecular_function | thymidine kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0009157 | biological_process | deoxyribonucleoside monophosphate biosynthetic process |
D | 0016301 | molecular_function | kinase activity |
D | 0046104 | biological_process | thymidine metabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0071897 | biological_process | DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 400 |
Chain | Residue |
A | CYS138 |
A | CYS141 |
A | CYS170 |
A | CYS173 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG A 500 |
Chain | Residue |
A | PHE14 |
A | TTP300 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 400 |
Chain | Residue |
B | CYS173 |
B | CYS138 |
B | CYS141 |
B | CYS170 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG B 500 |
Chain | Residue |
B | MET13 |
B | PHE14 |
B | TTP300 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 400 |
Chain | Residue |
C | CYS138 |
C | CYS141 |
C | CYS170 |
C | CYS173 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG C 500 |
Chain | Residue |
C | MET13 |
C | TTP300 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 400 |
Chain | Residue |
D | CYS138 |
D | CYS141 |
D | CYS170 |
D | CYS173 |
site_id | AC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE MG D 500 |
Chain | Residue |
D | TTP300 |
site_id | AC9 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE TTP A 300 |
Chain | Residue |
A | PRO12 |
A | MET13 |
A | PHE14 |
A | SER15 |
A | GLY16 |
A | LYS17 |
A | SER18 |
A | ASP82 |
A | GLU83 |
A | PHE86 |
A | LEU109 |
A | PHE113 |
A | ILE157 |
A | GLU158 |
A | ILE159 |
A | ILE160 |
A | GLY161 |
A | TYR166 |
A | MG500 |
site_id | BC1 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE TTP B 300 |
Chain | Residue |
B | MET13 |
B | PHE14 |
B | SER15 |
B | GLY16 |
B | LYS17 |
B | SER18 |
B | ASN42 |
B | ASP82 |
B | GLU83 |
B | PHE86 |
B | THR112 |
B | PHE113 |
B | PHE118 |
B | ILE157 |
B | GLU158 |
B | ILE159 |
B | ILE160 |
B | GLY161 |
B | TYR166 |
B | MG500 |
site_id | BC2 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE TTP C 300 |
Chain | Residue |
C | PRO12 |
C | MET13 |
C | PHE14 |
C | SER15 |
C | GLY16 |
C | LYS17 |
C | SER18 |
C | ASP82 |
C | GLU83 |
C | PHE86 |
C | LEU109 |
C | PHE113 |
C | ARG150 |
C | ILE157 |
C | GLU158 |
C | ILE159 |
C | ILE160 |
C | GLY161 |
C | TYR166 |
C | MG500 |
site_id | BC3 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE TTP D 300 |
Chain | Residue |
D | ILE159 |
D | ILE160 |
D | GLY161 |
D | TYR166 |
D | MG500 |
D | PRO12 |
D | MET13 |
D | PHE14 |
D | SER15 |
D | GLY16 |
D | LYS17 |
D | SER18 |
D | ASP82 |
D | GLU83 |
D | PHE86 |
D | LEU109 |
D | THR112 |
D | PHE113 |
D | PHE118 |
D | ILE157 |
D | GLU158 |
Functional Information from PROSITE/UniProt
site_id | PS00603 |
Number of Residues | 14 |
Details | TK_CELLULAR_TYPE Thymidine kinase cellular-type signature. GgnDmYqSvCRkCY |
Chain | Residue | Details |
A | GLY161-TYR174 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor => ECO:0000269|PubMed:17062140, ECO:0007744|PDB:2J87 |
Chain | Residue | Details |
A | GLU83 | |
B | GLU83 | |
C | GLU83 | |
D | GLU83 |
site_id | SWS_FT_FI2 |
Number of Residues | 28 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17062140, ECO:0007744|PDB:2J87 |
Chain | Residue | Details |
A | GLY11 | |
B | CYS138 | |
B | CYS141 | |
B | ILE157 | |
B | CYS170 | |
B | CYS173 | |
C | GLY11 | |
C | PHE113 | |
C | CYS138 | |
C | CYS141 | |
C | ILE157 | |
A | PHE113 | |
C | CYS170 | |
C | CYS173 | |
D | GLY11 | |
D | PHE113 | |
D | CYS138 | |
D | CYS141 | |
D | ILE157 | |
D | CYS170 | |
D | CYS173 | |
A | CYS138 | |
A | CYS141 | |
A | ILE157 | |
A | CYS170 | |
A | CYS173 | |
B | GLY11 | |
B | PHE113 |