Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2IYK

Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0003723molecular_functionRNA binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008270molecular_functionzinc ion binding
B0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
B0003723molecular_functionRNA binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1163
ChainResidue
ACYS13
ACYS16
ACYS35
AHIS45

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1164
ChainResidue
ACYS27
ASER30
AHIS49
ACYS55

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1165
ChainResidue
ACYS76
ACYS99
ACYS103
ACYS73

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1163
ChainResidue
BCYS13
BCYS16
BCYS35
BHIS45

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1164
ChainResidue
BCYS27
BSER30
BHIS49
BCYS55

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1165
ChainResidue
BCYS73
BCYS76
BCYS99
BCYS103

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues64
DetailsRegion: {"description":"C3H","evidences":[{"source":"PROSITE-ProRule","id":"PRU01341","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues56
DetailsRegion: {"description":"CC/SHH/C","evidences":[{"source":"PROSITE-ProRule","id":"PRU01341","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues60
DetailsRegion: {"description":"C4","evidences":[{"source":"PROSITE-ProRule","id":"PRU01341","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01341","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

PDB statisticsPDBj update infoContact PDBjnumon