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2H59

Sir2 H116A-deacetylated p53 peptide-3'-o-acetyl ADP ribose

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006338biological_processchromatin remodeling
A0008270molecular_functionzinc ion binding
A0016740molecular_functiontransferase activity
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0034979molecular_functionNAD-dependent protein lysine deacetylase activity
A0046872molecular_functionmetal ion binding
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
B0005737cellular_componentcytoplasm
B0006338biological_processchromatin remodeling
B0008270molecular_functionzinc ion binding
B0016740molecular_functiontransferase activity
B0017136molecular_functionNAD-dependent histone deacetylase activity
B0034979molecular_functionNAD-dependent protein lysine deacetylase activity
B0046872molecular_functionmetal ion binding
B0051287molecular_functionNAD binding
B0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
ACYS124
ACYS127
ACYS148
ACYS151

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1001
ChainResidue
BCYS124
BCYS127
BCYS148
BCYS151

site_idAC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE APR A 252
ChainResidue
AALA22
AGLY23
ATHR26
APRO27
AASP32
APHE33
AARG34
ATYR40
AGLN98
APHE162
AGLY188
ASER189
ASER190
AVAL193
AASN214
ALEU215
AMET230
AASP231
AVAL232
AHOH1009
AHOH1042
AHOH1058
AHOH1064
AHOH1089
AHOH1102
DLYS11
AGLY21

site_idAC4
Number of Residues28
DetailsBINDING SITE FOR RESIDUE 3OD B 253
ChainResidue
BGLY21
BALA22
BGLY23
BTHR26
BPRO27
BASP32
BPHE33
BARG34
BTYR40
BGLN98
BALA116
BPHE162
BGLY188
BSER189
BSER190
BVAL193
BASN214
BLEU215
BMET230
BASP231
BVAL232
BHOH1003
BHOH1006
BHOH1035
BHOH1053
BHOH1075
ELYS11
EHOH192

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N6-methyllysine; by SETD7 => ECO:0000269|PubMed:15525938, ECO:0000269|PubMed:16415881
ChainResidueDetails
DLYS1
ELYS1

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000269|PubMed:10656795
ChainResidueDetails
DLYS2
AGLY216
AASP231
AVAL232
BALA22
BTHR26
BARG34
BGLN98
BALA116
BSER189
BSER190
ELYS2
BASN214
BLEU215
BGLY216
BASP231
BVAL232
AARG34
AGLN98
AALA116
ASER189
ASER190
AASN214
ALEU215

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:29474172, ECO:0007744|PubMed:19608861
ChainResidueDetails
DLYS10
ELYS10
AASP101
BPHE33
BILE100
BASP101

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-methyllysine; by KMT5A; alternate => ECO:0000269|PubMed:17707234, ECO:0000269|PubMed:20870725, ECO:0000269|PubMed:22864287
ChainResidueDetails
DLYS11
ELYS11
ACYS148
ACYS151
BCYS124
BCYS127
BCYS148
BCYS151

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:11124955, ECO:0000269|PubMed:22214662, ECO:0000269|Ref.37
ChainResidueDetails
DLYS15
ELYS15

222415

PDB entries from 2024-07-10

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