Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006260 | biological_process | DNA replication |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN A 3000 |
Chain | Residue |
A | ASP12 |
A | U5P2000 |
A | MN3001 |
A | HOH5002 |
A | HOH5012 |
A | HOH5024 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN A 3001 |
Chain | Residue |
A | U5P2000 |
A | MN3000 |
A | HOH5100 |
A | ASP12 |
A | GLU14 |
A | ASP167 |
site_id | AC3 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE U5P A 2000 |
Chain | Residue |
A | ASP12 |
A | THR13 |
A | GLU14 |
A | THR15 |
A | GLY17 |
A | MET18 |
A | GLU61 |
A | ALA62 |
A | VAL65 |
A | HIS66 |
A | PHE102 |
A | HIS162 |
A | ASP167 |
A | U5P2100 |
A | MN3000 |
A | MN3001 |
A | HOH5100 |
A | HOH5102 |
A | HOH5175 |
site_id | AC4 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE U5P A 2100 |
Chain | Residue |
A | HIS98 |
A | ASN99 |
A | SER144 |
A | LEU145 |
A | ARG159 |
A | HIS162 |
A | U5P2000 |
A | HOH5012 |
A | HOH5023 |
A | HOH5030 |
A | HOH5175 |
A | HOH5191 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO A 4000 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 5000 |
Chain | Residue |
A | ILE104 |
A | ASN122 |
A | VAL127 |
A | HOH5146 |
A | HOH5153 |
site_id | AC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG A 3824 |
Chain | Residue |
A | ILE21 |
A | GLY22 |
A | HIS66 |
A | GLY67 |
A | PHE72 |
A | LEU161 |
A | HOH5097 |
A | HOH5198 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | ACT_SITE: Proton acceptor |
Chain | Residue | Details |
A | HIS162 | |
site_id | SWS_FT_FI2 |
Number of Residues | 5 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP12 | |
A | GLU14 | |
A | GLU61 | |
A | HIS66 | |
A | ASP167 | |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 5 |
Details | M-CSA 754 |
Chain | Residue | Details |
A | ASP12 | metal ligand |
A | GLU14 | hydrogen bond acceptor, metal ligand, proton acceptor, proton donor |
A | GLU61 | electrostatic stabiliser, increase basicity, polar interaction |
A | HIS162 | proton acceptor, proton donor |
A | ASP167 | metal ligand |