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2F6J

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state

Functional Information from GO Data
ChainGOidnamespacecontents
A0006357biological_processregulation of transcription by RNA polymerase II
A0016589cellular_componentNURF complex
B0006357biological_processregulation of transcription by RNA polymerase II
B0016589cellular_componentNURF complex
C0006357biological_processregulation of transcription by RNA polymerase II
C0016589cellular_componentNURF complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
ACYS11
ACYS13
AHIS34
ACYS37

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1002
ChainResidue
ACYS26
ACYS29
ACYS53
ACYS56

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1003
ChainResidue
BCYS13
BHIS34
BCYS37
BCYS11

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1004
ChainResidue
BCYS26
BCYS29
BCYS53
BCYS56

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 1005
ChainResidue
CCYS11
CCYS13
CHIS34
CCYS37

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 1006
ChainResidue
CCYS26
CCYS29
CCYS53
CCYS56

Functional Information from PROSITE/UniProt
site_idPS00633
Number of Residues58
DetailsBROMODOMAIN_1 Bromodomain signature. AwpFlepvDpndap..DYYgvIkepMdlatMeervqrry..Yekltefvadmtk.IfdNCryY
ChainResidueDetails
AALA90-TYR147

site_idPS01186
Number of Residues16
DetailsEGF_2 EGF-like domain signature 2. CiCktPYdeskfyigC
ChainResidueDetails
ACYS11-CYS26

site_idPS01359
Number of Residues46
DetailsZF_PHD_1 Zinc finger PHD-type signature. Ci.Cktpydeskfy...................................IgCdr..Cqnw.YHgrCvgilqseaelide................................YvCpqC
ChainResidueDetails
ACYS11-CYS56

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues153
DetailsZN_FING: PHD-type 2 => ECO:0000255|PROSITE-ProRule:PRU00146
ChainResidueDetails
ALYS8-THR59
BLYS8-THR59
CLYS8-THR59

site_idSWS_FT_FI2
Number of Residues12
DetailsSITE: Histone H3K4me3 binding
ChainResidueDetails
ATYR10
CTYR17
CTYR23
CTRP32
ATYR17
ATYR23
ATRP32
BTYR10
BTYR17
BTYR23
BTRP32
CTYR10

218853

PDB entries from 2024-04-24

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