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2DP6

Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004844molecular_functionuracil DNA N-glycosylase activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0006974biological_processDNA damage response
A0016787molecular_functionhydrolase activity
A0033958molecular_functionDNA-deoxyinosine glycosylase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0097506molecular_functiondeaminated base DNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SF4 A 220
ChainResidue
ACYS13
ALEU15
ACYS16
ALEU19
ACYS115
ACYS130

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 2HP A 1001
ChainResidue
ASER65
APHE72
AASP75
AHOH2052
AHOH2074
CORP8
AALA59
APRO60
AGLY61

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 2HP D 1003
ChainResidue
AARG31
APRO49
AGLU50
DDC13
DDA14

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1004
ChainResidue
ATHR73
AGLY74
AASP75
AGLU95
ASER96

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1005
ChainResidue
APRO37
ATYR38
AGLU87
AARG203
AGLU204
AHOH2031
AHOH2084

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 2001
ChainResidue
ATHR202
AARG203

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"MAY-2006","submissionDatabase":"PDB data bank","title":"Structure of family 5 uracil-DNA glycosylase bound to DNA reveals insights into the mechanism for substrate recognition and catalysis.","authors":["Kosaka H.","Nakagawa N.","Masui R.","Kuramitsu S."]}},{"source":"PDB","id":"2D3Y","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2DDG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2DEM","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mug
ChainResidueDetails
AALA59

239803

PDB entries from 2025-08-06

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