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2C5A

GDP-mannose-3', 5' -epimerase (Arabidopsis thaliana),Y174F, with GDP-beta-L-galactose bound in the active site

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0009536cellular_componentplastid
A0016853molecular_functionisomerase activity
A0019853biological_processL-ascorbic acid biosynthetic process
A0047918molecular_functionGDP-mannose 3,5-epimerase activity
A0051287molecular_functionNAD binding
B0000166molecular_functionnucleotide binding
B0005829cellular_componentcytosol
B0009536cellular_componentplastid
B0016853molecular_functionisomerase activity
B0019853biological_processL-ascorbic acid biosynthetic process
B0047918molecular_functionGDP-mannose 3,5-epimerase activity
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GDC A1376
ChainResidue
AMET102
AHIS202
AASN203
AGLU216
ALYS217
AALA218
AALA221
APHE222
ALYS225
ATRP236
AGLN241
AGLY103
AARG243
AMET277
APRO300
AGLU301
AARG306
ASER356
AHOH2438
AHOH2439
AHOH2440
AGLY104
AMET105
AILE108
ASER143
ACYS145
APHE174
APHE201

site_idAC2
Number of Residues33
DetailsBINDING SITE FOR RESIDUE NAD A1378
ChainResidue
AGLY36
AGLY37
APHE38
AILE39
AASP58
ATRP59
AVAL77
AASP78
ALEU79
AARG80
ALEU98
AALA99
AALA100
AMET102
AILE122
AALA141
ASER142
ASER143
APHE174
ALYS178
APHE201
AASN203
AILE204
ALYS217
AHOH2072
AHOH2245
AHOH2441
AHOH2442
AHOH2443
AHOH2444
AHOH2445
AHOH2446
AHOH2447

site_idAC3
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GDC B1372
ChainResidue
BMET102
BGLY103
BGLY104
BMET105
BILE108
BSER143
BCYS145
BPHE174
BPHE201
BHIS202
BASN203
BGLU216
BLYS217
BALA218
BALA221
BPHE222
BLYS225
BTRP236
BGLN241
BARG243
BMET277
BPRO300
BGLU301
BARG306
BSER356
BHOH2533
BHOH2534
BHOH2535

site_idAC4
Number of Residues36
DetailsBINDING SITE FOR RESIDUE NAD B1374
ChainResidue
BLEU79
BARG80
BLEU98
BALA99
BALA100
BMET102
BILE122
BALA141
BSER142
BSER143
BPHE174
BLYS178
BPHE201
BASN203
BILE204
BLYS217
BARG371
BHOH2183
BHOH2330
BHOH2536
BHOH2537
BHOH2538
BHOH2539
BHOH2540
BHOH2541
BHOH2542
BGLY34
BGLY36
BGLY37
BPHE38
BILE39
BASP58
BTRP59
BLYS60
BVAL77
BASP78

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BTB B1380
ChainResidue
AGLU169
APRO170
AGLN171
AHOH2179
AHOH2209
BTRP166
BGLU183
BLYS186
BHOH2553

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A1379
ChainResidue
ATYR14
ALYS15
AGLU16
BARG330

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A1380
ChainResidue
AVAL77
AASP78
AASN84
AGLY368
AHOH2448
AHOH2450
BHIS295

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A1381
ChainResidue
AGLY360
ATHR361
AHOH2451
AHOH2452
AHOH2453

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A1382
ChainResidue
AARG19
AARG46
AASP249
AHOH2280

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A1383
ChainResidue
ATHR210
ATRP211
ALYS212
AHOH2454
AHOH2455

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A1384
ChainResidue
AGLU162
ASER163
AHOH2200
AHOH2456
AHOH2457
AHOH2458

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A1385
ChainResidue
AASN189
AARG264
AHOH2459
AHOH2460

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A1386
ChainResidue
AASN157
AHOH2194
AHOH2461

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A1387
ChainResidue
AARG257
AGLY318
ATRP319
AHOH2462
AHOH2463
BLYS29
BHOH2047

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A1388
ChainResidue
AASP101
AVAL114
AARG215
AGLN362
AARG371
AHOH2418
AHOH2464
AHOH2465

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A1389
ChainResidue
AASN62
AGLU63
AMET65
AGLY375

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A1390
ChainResidue
AGLY213
AARG224
ALEU352
ATYR353
ASER355
ALYS357
AHOH2260
AHOH2404

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B1375
ChainResidue
BASP272
BASN307
BHOH2270
BHOH2438
BHOH2544
BHOH2545

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B1376
ChainResidue
BARG19
BARG46
BASP249

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT B1377
ChainResidue
BVAL77
BASP78
BASN84
BGLY368
BLEU370
BHOH2546
BHOH2547

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B1378
ChainResidue
BGLU162
BSER163
BHOH2548
BHOH2549
BHOH2550

site_idCC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT B1379
ChainResidue
BLYS212
BGLY213
BARG224
BLEU352
BTYR353
BSER355
BLYS357
BHOH2496
BHOH2552

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
APHE174
BPHE174

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:16366586
ChainResidueDetails
AGLY34
BLYS178
AASP58
AASP78
APHE174
ALYS178
BGLY34
BASP58
BASP78
BPHE174

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING:
ChainResidueDetails
AGLY103
BSER143
BASN203
BGLU216
BLYS225
BGLN241
BARG306
BSER356
ASER143
AASN203
AGLU216
ALYS225
AGLN241
AARG306
ASER356
BGLY103

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylglycine => ECO:0007744|PubMed:22223895
ChainResidueDetails
AGLY2
BGLY2

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19376835
ChainResidueDetails
ASER369
BSER369

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER143
APHE174
ALYS178

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER143
BPHE174
BLYS178

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER142
APHE174
ALYS178

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER142
BPHE174
BLYS178

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER143
APHE174
AASN119
ALYS178

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER143
BPHE174
BASN119
BLYS178

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
APHE174
ALYS178

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BPHE174
BLYS178

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PDB entries from 2024-05-01

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