2BME
high resolution structure of GppNHp-bound human Rab4a
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003924 | molecular_function | GTPase activity |
| A | 0005525 | molecular_function | GTP binding |
| A | 0032482 | biological_process | Rab protein signal transduction |
| B | 0003924 | molecular_function | GTPase activity |
| B | 0005525 | molecular_function | GTP binding |
| B | 0032482 | biological_process | Rab protein signal transduction |
| C | 0003924 | molecular_function | GTPase activity |
| C | 0005525 | molecular_function | GTP binding |
| C | 0032482 | biological_process | Rab protein signal transduction |
| D | 0003924 | molecular_function | GTPase activity |
| D | 0005525 | molecular_function | GTP binding |
| D | 0032482 | biological_process | Rab protein signal transduction |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A1184 |
| Chain | Residue |
| A | SER24 |
| A | THR42 |
| A | GNP1180 |
| A | HOH2032 |
| A | HOH2063 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B1179 |
| Chain | Residue |
| B | HOH2093 |
| B | SER24 |
| B | THR42 |
| B | GNP1178 |
| B | HOH2040 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG C1181 |
| Chain | Residue |
| C | SER24 |
| C | THR42 |
| C | GNP1178 |
| C | HOH2037 |
| C | HOH2068 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG D1180 |
| Chain | Residue |
| D | SER24 |
| D | THR42 |
| D | GNP1179 |
| D | HOH2036 |
| D | HOH2066 |
| site_id | AC5 |
| Number of Residues | 26 |
| Details | BINDING SITE FOR RESIDUE GNP A1180 |
| Chain | Residue |
| A | ALA19 |
| A | GLY20 |
| A | THR21 |
| A | GLY22 |
| A | LYS23 |
| A | SER24 |
| A | CYS25 |
| A | PHE35 |
| A | SER39 |
| A | HIS41 |
| A | THR42 |
| A | GLY68 |
| A | ASN123 |
| A | LYS124 |
| A | ASP126 |
| A | LEU127 |
| A | SER153 |
| A | ALA154 |
| A | LEU155 |
| A | MG1184 |
| A | HOH2027 |
| A | HOH2032 |
| A | HOH2063 |
| A | HOH2155 |
| A | HOH2156 |
| A | HOH2157 |
| site_id | AC6 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE TRS A1181 |
| Chain | Residue |
| A | LEU150 |
| A | GLU151 |
| A | GLU158 |
| A | ASN159 |
| A | HOH2134 |
| A | HOH2158 |
| A | HOH2159 |
| A | HOH2160 |
| C | LEU10 |
| C | LYS12 |
| C | GLN62 |
| C | GLY82 |
| C | HOH2092 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE TRS A1182 |
| Chain | Residue |
| A | PHE47 |
| A | SER49 |
| A | LYS60 |
| A | GLN62 |
| B | ARG71 |
| site_id | AC8 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE GNP B1178 |
| Chain | Residue |
| B | ALA19 |
| B | GLY20 |
| B | THR21 |
| B | GLY22 |
| B | LYS23 |
| B | SER24 |
| B | CYS25 |
| B | PHE35 |
| B | LYS36 |
| B | SER39 |
| B | HIS41 |
| B | THR42 |
| B | GLY68 |
| B | ASN123 |
| B | LYS124 |
| B | ASP126 |
| B | LEU127 |
| B | SER153 |
| B | ALA154 |
| B | LEU155 |
| B | MG1179 |
| B | HOH2035 |
| B | HOH2040 |
| B | HOH2093 |
| B | HOH2209 |
| B | HOH2210 |
| B | HOH2211 |
| B | HOH2212 |
| B | HOH2213 |
| site_id | AC9 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE GNP C1178 |
| Chain | Residue |
| C | CYS25 |
| C | PHE35 |
| C | SER39 |
| C | HIS41 |
| C | THR42 |
| C | GLY68 |
| C | ASN123 |
| C | LYS124 |
| C | ASP126 |
| C | LEU127 |
| C | SER153 |
| C | ALA154 |
| C | LEU155 |
| C | MG1181 |
| C | HOH2030 |
| C | HOH2037 |
| C | HOH2068 |
| C | HOH2161 |
| C | HOH2162 |
| C | HOH2163 |
| C | HOH2164 |
| C | HOH2165 |
| C | HOH2166 |
| C | HOH2167 |
| C | ALA19 |
| C | GLY20 |
| C | THR21 |
| C | GLY22 |
| C | LYS23 |
| C | SER24 |
| site_id | BC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE TRS C1179 |
| Chain | Residue |
| A | LEU10 |
| A | PHE11 |
| A | LYS12 |
| A | GLY82 |
| C | LYS125 |
| C | PHE135 |
| C | GLU151 |
| C | ASN159 |
| C | HOH2146 |
| C | HOH2168 |
| C | HOH2169 |
| C | HOH2170 |
| site_id | BC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE TRS D1178 |
| Chain | Residue |
| D | LEU10 |
| D | PHE11 |
| D | LYS12 |
| D | GLY82 |
| D | LYS125 |
| D | PHE135 |
| D | GLU151 |
| D | ASN159 |
| D | HOH2118 |
| D | HOH2136 |
| site_id | BC3 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE GNP D1179 |
| Chain | Residue |
| D | ALA19 |
| D | GLY20 |
| D | THR21 |
| D | GLY22 |
| D | LYS23 |
| D | SER24 |
| D | CYS25 |
| D | PHE35 |
| D | SER39 |
| D | HIS41 |
| D | THR42 |
| D | GLY68 |
| D | ASN123 |
| D | LYS124 |
| D | ASP126 |
| D | LEU127 |
| D | SER153 |
| D | ALA154 |
| D | LEU155 |
| D | MG1180 |
| D | HOH2033 |
| D | HOH2036 |
| D | HOH2038 |
| D | HOH2066 |
| D | HOH2137 |
| D | HOH2138 |
| D | HOH2139 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE BME A1183 |
| Chain | Residue |
| A | LEU147 |
| A | MET148 |
| A | HOH2132 |
| A | HOH2162 |
| C | ASP8 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE BME C1180 |
| Chain | Residue |
| C | GLN69 |
| C | GLU70 |
| C | ARG71 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 20 |
| Details | Motif: {"description":"Switch 1","evidences":[{"source":"UniProtKB","id":"P61106","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 36 |
| Details | Motif: {"description":"Switch 2","evidences":[{"source":"UniProtKB","id":"P61106","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 40 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z0K","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"1Z0K","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15907487","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YU9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1Z0K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BME","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P61018","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"5-glutamyl serotonin","evidences":[{"source":"UniProtKB","id":"P56371","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| A | GLN69 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| B | GLN69 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| C | GLN69 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| D | GLN69 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| A | GLY20 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| B | GLY20 |
| site_id | CSA7 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| C | GLY20 |
| site_id | CSA8 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| D | GLY20 |
