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2BME

high resolution structure of GppNHp-bound human Rab4a

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0032482biological_processRab protein signal transduction
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0032482biological_processRab protein signal transduction
C0003924molecular_functionGTPase activity
C0005525molecular_functionGTP binding
C0032482biological_processRab protein signal transduction
D0003924molecular_functionGTPase activity
D0005525molecular_functionGTP binding
D0032482biological_processRab protein signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A1184
ChainResidue
ASER24
ATHR42
AGNP1180
AHOH2032
AHOH2063

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B1179
ChainResidue
BHOH2093
BSER24
BTHR42
BGNP1178
BHOH2040

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C1181
ChainResidue
CSER24
CTHR42
CGNP1178
CHOH2037
CHOH2068

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D1180
ChainResidue
DSER24
DTHR42
DGNP1179
DHOH2036
DHOH2066

site_idAC5
Number of Residues26
DetailsBINDING SITE FOR RESIDUE GNP A1180
ChainResidue
AALA19
AGLY20
ATHR21
AGLY22
ALYS23
ASER24
ACYS25
APHE35
ASER39
AHIS41
ATHR42
AGLY68
AASN123
ALYS124
AASP126
ALEU127
ASER153
AALA154
ALEU155
AMG1184
AHOH2027
AHOH2032
AHOH2063
AHOH2155
AHOH2156
AHOH2157

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TRS A1181
ChainResidue
ALEU150
AGLU151
AGLU158
AASN159
AHOH2134
AHOH2158
AHOH2159
AHOH2160
CLEU10
CLYS12
CGLN62
CGLY82
CHOH2092

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE TRS A1182
ChainResidue
APHE47
ASER49
ALYS60
AGLN62
BARG71

site_idAC8
Number of Residues29
DetailsBINDING SITE FOR RESIDUE GNP B1178
ChainResidue
BALA19
BGLY20
BTHR21
BGLY22
BLYS23
BSER24
BCYS25
BPHE35
BLYS36
BSER39
BHIS41
BTHR42
BGLY68
BASN123
BLYS124
BASP126
BLEU127
BSER153
BALA154
BLEU155
BMG1179
BHOH2035
BHOH2040
BHOH2093
BHOH2209
BHOH2210
BHOH2211
BHOH2212
BHOH2213

site_idAC9
Number of Residues30
DetailsBINDING SITE FOR RESIDUE GNP C1178
ChainResidue
CCYS25
CPHE35
CSER39
CHIS41
CTHR42
CGLY68
CASN123
CLYS124
CASP126
CLEU127
CSER153
CALA154
CLEU155
CMG1181
CHOH2030
CHOH2037
CHOH2068
CHOH2161
CHOH2162
CHOH2163
CHOH2164
CHOH2165
CHOH2166
CHOH2167
CALA19
CGLY20
CTHR21
CGLY22
CLYS23
CSER24

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TRS C1179
ChainResidue
ALEU10
APHE11
ALYS12
AGLY82
CLYS125
CPHE135
CGLU151
CASN159
CHOH2146
CHOH2168
CHOH2169
CHOH2170

site_idBC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE TRS D1178
ChainResidue
DLEU10
DPHE11
DLYS12
DGLY82
DLYS125
DPHE135
DGLU151
DASN159
DHOH2118
DHOH2136

site_idBC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE GNP D1179
ChainResidue
DALA19
DGLY20
DTHR21
DGLY22
DLYS23
DSER24
DCYS25
DPHE35
DSER39
DHIS41
DTHR42
DGLY68
DASN123
DLYS124
DASP126
DLEU127
DSER153
DALA154
DLEU155
DMG1180
DHOH2033
DHOH2036
DHOH2038
DHOH2066
DHOH2137
DHOH2138
DHOH2139

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME A1183
ChainResidue
ALEU147
AMET148
AHOH2132
AHOH2162
CASP8

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE BME C1180
ChainResidue
CGLN69
CGLU70
CARG71

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:16034420
ChainResidueDetails
AGLY22
CGLU70
CASP128
CGLU158
DGLY22
DGLU70
DASP128
DGLU158
AGLU70
AASP128
AGLU158
BGLY22
BGLU70
BASP128
BGLU158
CGLY22

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: 5-glutamyl serotonin => ECO:0000250|UniProtKB:P56371
ChainResidueDetails
ASER74
BSER74
CSER74
DSER74

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLN69

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLN69

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
CGLN69

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
DGLN69

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLY20

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLY20

site_idCSA7
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
CGLY20

site_idCSA8
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
DGLY20

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PDB entries from 2024-05-01

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