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1ZNV

How a His-metal finger endonuclease ColE7 binds and cleaves DNA with a transition metal ion cofactor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0015643molecular_functiontoxic substance binding
A0030153biological_processbacteriocin immunity
B0004519molecular_functionendonuclease activity
B0005102molecular_functionsignaling receptor binding
B0009617biological_processresponse to bacterium
B0019835biological_processcytolysis
C0005515molecular_functionprotein binding
C0015643molecular_functiontoxic substance binding
C0030153biological_processbacteriocin immunity
D0004519molecular_functionendonuclease activity
D0005102molecular_functionsignaling receptor binding
D0009617biological_processresponse to bacterium
D0019835biological_processcytolysis
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NI B 580
ChainResidue
BHIS544
BHIS569
BHIS573
BPO4581

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 581
ChainResidue
BNI580
BLEU543
BHIS544
BGLU545
BHIS569
BHIS573

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI D 580
ChainResidue
DHIS544
DHIS569
DHIS573
DPO4581
DHOH1022

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 D 581
ChainResidue
DLEU543
DHIS544
DGLU545
DHIS569
DHIS573
DNI580
DHOH977
DHOH1022

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING:
ChainResidueDetails
BHIS544
BHIS569
BHIS573
DHIS544
DHIS569
DHIS573

Catalytic Information from CSA
site_idCSA1
Number of Residues1
Detailsa catalytic site defined by CSA, PubMed 16434744
ChainResidueDetails
BGLU545

site_idCSA2
Number of Residues1
Detailsa catalytic site defined by CSA, PubMed 16434744
ChainResidueDetails
DGLU545

site_idMCSA1
Number of Residues5
DetailsM-CSA 838
ChainResidueDetails
BARG447electrostatic stabiliser, proton acceptor, proton donor, proton relay
BHIS544metal ligand
BGLU545proton acceptor, proton donor
BHIS569metal ligand
BHIS573metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 838
ChainResidueDetails
DARG447electrostatic stabiliser, proton acceptor, proton donor, proton relay
DHIS544metal ligand
DGLU545proton acceptor, proton donor
DHIS569metal ligand
DHIS573metal ligand

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PDB entries from 2024-07-31

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