Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1W88

The crystal structure of pyruvate dehydrogenase E1(D180N,E183Q) bound to the peripheral subunit binding domain of E2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
A	0005515	molecular_function	protein binding
A	0016491	molecular_function	oxidoreductase activity
A	0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
B	0003824	molecular_function	catalytic activity
B	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
B	0005515	molecular_function	protein binding
B	0016491	molecular_function	oxidoreductase activity
C	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
C	0005515	molecular_function	protein binding
C	0016491	molecular_function	oxidoreductase activity
C	0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D	0003824	molecular_function	catalytic activity
D	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
D	0005515	molecular_function	protein binding
D	0016491	molecular_function	oxidoreductase activity
E	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
E	0005515	molecular_function	protein binding
E	0016491	molecular_function	oxidoreductase activity
E	0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
F	0003824	molecular_function	catalytic activity
F	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
F	0005515	molecular_function	protein binding
F	0016491	molecular_function	oxidoreductase activity
G	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
G	0005515	molecular_function	protein binding
G	0016491	molecular_function	oxidoreductase activity
G	0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
H	0003824	molecular_function	catalytic activity
H	0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
H	0005515	molecular_function	protein binding
H	0016491	molecular_function	oxidoreductase activity
I	0016746	molecular_function	acyltransferase activity
J	0016746	molecular_function	acyltransferase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG A1368

Chain	Residue
A	ASP173
A	ASN202
A	PHE204
A	TPP1370

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG C1368

Chain	Residue
C	ASP173
C	ASN202
C	PHE204
C	TPP1370
C	HOH2095

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG E1368

Chain	Residue
E	ASP173
E	GLN200
E	ASN202
E	TPP1370

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MG G1368

Chain	Residue
G	ASP173
G	ASN202
G	TPP1370

site_id	AC5
Number of Residues	20
Details	BINDING SITE FOR RESIDUE TDP A1370

Chain	Residue
A	TYR102
A	ARG103
A	ILE142
A	ILE144
A	GLY172
A	ASP173
A	GLY174
A	GLY175
A	GLN178
A	ASN202
A	PHE204
A	ALA205
A	ILE206
A	MG1368
A	HOH2096
D	GLU28
D	LEU57
D	GLU59
D	GLN81
D	PHE85

site_id	AC6
Number of Residues	23
Details	BINDING SITE FOR RESIDUE TDP C1370

Chain	Residue
B	GLU28
B	LEU57
B	GLU59
B	GLN81
B	PHE85
C	TYR102
C	ARG103
C	ILE142
C	ILE144
C	GLY172
C	ASP173
C	GLY174
C	GLY175
C	GLN178
C	ASN202
C	PHE204
C	ALA205
C	ILE206
C	ARG267
C	MG1368
C	HOH2095
C	HOH2167
C	HOH2168

site_id	AC7
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TDP E1370

Chain	Residue
E	TYR102
E	ARG103
E	ILE144
E	GLY172
E	ASP173
E	GLY174
E	GLY175
E	ASN202
E	MG1368
H	GLU28
H	GLU59
H	PHE85

site_id	AC8
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TDP G1370

Chain	Residue
F	GLU28
G	TYR102
G	ARG103
G	ILE142
G	ILE143
G	ILE144
G	GLY172
G	ASP173
G	GLY174
G	GLY175
G	ASN202
G	MG1368

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	BINDING: BINDING => ECO:0000250

Chain	Residue	Details
B	SER60
D	SER60
F	SER60
H	SER60

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
F	GLU59

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
H	GLU59

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
B	GLU59

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
D	GLU59

site_id	CSA5
Number of Residues	2
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
F	GLU59
F	HIS128

site_id	CSA6
Number of Residues	2
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
B	GLU59
B	HIS128

site_id	CSA7
Number of Residues	2
Details	Annotated By Reference To The Literature 1dtw

Chain	Residue	Details
D	GLU59
D	HIS128

site_id	MCSA1
Number of Residues	2
Details	M-CSA 106

Chain	Residue	Details
B	SER60	proton acceptor, proton donor
B	SER129	proton acceptor, proton donor
A	ARG282	electrostatic stabiliser, hydrogen bond donor

site_id	MCSA2
Number of Residues	2
Details	M-CSA 106

Chain	Residue	Details
D	SER60	proton acceptor, proton donor
D	SER129	proton acceptor, proton donor
C	ARG282	electrostatic stabiliser, hydrogen bond donor

site_id	MCSA3
Number of Residues	2
Details	M-CSA 106

Chain	Residue	Details
F	SER60	proton acceptor, proton donor
F	SER129	proton acceptor, proton donor
E	ARG282	electrostatic stabiliser, hydrogen bond donor

site_id	MCSA4
Number of Residues	2
Details	M-CSA 106

Chain	Residue	Details
H	SER60	proton acceptor, proton donor
H	SER129	proton acceptor, proton donor
G	ARG282	electrostatic stabiliser, hydrogen bond donor

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)