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1R3V

Uroporphyrinogen Decarboxylase single mutant D86E in complex with coproporphyrinogen-I

Functional Information from GO Data
ChainGOidnamespacecontents
A0004853molecular_functionuroporphyrinogen decarboxylase activity
A0005515molecular_functionprotein binding
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006778biological_processporphyrin-containing compound metabolic process
A0006779biological_processporphyrin-containing compound biosynthetic process
A0006782biological_processprotoporphyrinogen IX biosynthetic process
A0006783biological_processheme biosynthetic process
A0006784biological_processheme A biosynthetic process
A0006785biological_processheme B biosynthetic process
A0006787biological_processporphyrin-containing compound catabolic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0042168biological_processheme metabolic process
A0048034biological_processheme O biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE 1CP A 368
ChainResidue
AARG37
AMET100
APRO106
APHE154
ATYR164
AGLY170
APHE217
ASER219
AHIS339
ABME9500
AHOH9548
AALA39
AHOH9612
AHOH9617
AHOH9628
AHOH9663
AHOH9693
AHOH9731
AHOH9771
AHOH9783
AHOH9788
AHOH9823
AARG41
AHOH9838
AHOH9859
APHE46
APHE55
APHE84
ASER85
AGLU86
AILE87

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME A 9500
ChainResidue
AARG37
A1CP368
AHOH9881
AHOH9882

Functional Information from PROSITE/UniProt
site_idPS00906
Number of Residues10
DetailsUROD_1 Uroporphyrinogen decarboxylase signature 1. PVWCMRQAGR
ChainResidueDetails
APRO32-ARG41

site_idPS00907
Number of Residues17
DetailsUROD_2 Uroporphyrinogen decarboxylase signature 2. IGFAGaPWTLmtYmv.EG
ChainResidueDetails
AILE152-GLY168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING:
ChainResidueDetails
AHIS339
AARG37
APHE55
ASER85
AGLU86
ATYR164
ASER219

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Transition state stabilizer
ChainResidueDetails
AGLU86

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 914
ChainResidueDetails
AARG37proton shuttle (general acid/base)
AARG41electrostatic stabiliser
AARG50proton shuttle (general acid/base)
AGLU86enhance reactivity, modifies pKa, transition state stabiliser
ATYR164electrostatic stabiliser

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PDB entries from 2024-04-17

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