1R3V
Uroporphyrinogen Decarboxylase single mutant D86E in complex with coproporphyrinogen-I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-06-15 |
Detector | RIGAKU RAXIS IIC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 103.111, 103.111, 73.313 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 * - 1.900 |
R-factor | 0.15203 |
Rwork | 0.151 |
R-free | 0.18700 * |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1uro |
RMSD bond length | 0.017 |
RMSD bond angle | 1.630 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.134 | 0.399 |
Total number of observations | 218142 * | |
Number of reflections | 35021 | |
<I/σ(I)> | 9 | 2.5 |
Completeness [%] | 98.2 * | 95.2 * |
Redundancy | 6.2 | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.5 * | 21 * | Phillips, J.D., (1997) Protein Sci., 6, 1343. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 6 (mg/ml) | |
2 | 1 | drop | Tris | 50 (mM) | pH7.5 |
3 | 1 | drop | glycerol | 10 (%) | |
4 | 1 | drop | beta-mercaptoethanol | 1 (mM) | |
5 | 1 | reservoir | MPD | 16 (%) | |
6 | 1 | reservoir | MES | 0.1 | pH6.0 |