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1MW9

Crystal Structure of H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I

Functional Information from GO Data
ChainGOidnamespacecontents
X0003677molecular_functionDNA binding
X0003916molecular_functionDNA topoisomerase activity
X0003917molecular_functionDNA topoisomerase type I (single strand cut, ATP-independent) activity
X0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 X 2001
ChainResidue
XARG114
XARG161
XHOH1273
XHOH1447
XHOH1465
XHOH1550

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 X 2002
ChainResidue
XTRP220
XLYS251
XHOH1148
XHOH1184
XHOH1200
XHOH1416
XPRO11
XLYS28
XSER29

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 X 2003
ChainResidue
XPRO87
XGLY88
XLYS89
XGLU90
XHOH1124
XHOH1233
XHOH1253
XHOH1317

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 X 2004
ChainResidue
XTRP560
XLYS561
XHOH1119
XHOH1145
XHOH1173
XHOH1248
XHOH1271

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 X 2005
ChainResidue
XARG515
XARG516
XHOH1161
XHOH1165
XHOH1289
XHOH1502

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 X 2006
ChainResidue
XLYS436
XALA440
XHIS556
XHOH1188
XHOH1209
XHOH1267

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 X 2007
ChainResidue
XARG202
XALA458
XARG535
XASN539
XHOH1005
XHOH1011
XHOH1359
XHOH1400

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 X 2008
ChainResidue
XGLN468
XHIS469
XPHE470
XLYS472

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 X 2009
ChainResidue
XASP113
XARG114
XSER495
XHOH1013
XHOH1069
XHOH1086
XHOH1206
XHOH1350
XHOH1550

Functional Information from PROSITE/UniProt
site_idPS00396
Number of Residues15
DetailsTOPO_IA_1 Topoisomerase (Topo) IA-type active site signature. QrLYEagy.........ITYmRTD
ChainResidueDetails
XGLN309-ASP323

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|PROSITE-ProRule:PRU01383, ECO:0000269|PubMed:21482796, ECO:0000269|PubMed:8114910, ECO:0000269|PubMed:9497321
ChainResidueDetails
XTYR319

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00952
ChainResidueDetails
XGLU9

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
XASP111

site_idSWS_FT_FI4
Number of Residues8
DetailsSITE: Interaction with DNA
ChainResidueDetails
XHIS33
XARG168
XARG169
XASP172
XTYR177
XTRP184
XARG321
XARG507

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1ecl
ChainResidueDetails
XASP111
XTYR319
XGLU9
XARG365

site_idMCSA1
Number of Residues7
DetailsM-CSA 366
ChainResidueDetails

237735

PDB entries from 2025-06-18

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