1M5V

Transition State Stabilization by a Catalytic RNA

Functional Information from GO Data

Chain	GOid	namespace	contents
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 93

Chain	Residue
E	A22
E	A59

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site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 94

Chain	Residue
E	U38
E	G39

---

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 93

Chain	Residue
B	A22
B	A59
B	U60

---

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 94

Chain	Residue
B	U43
B	U38
B	G39

---

site_id	AC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 96

Chain	Residue
B	HOH321

---

site_id	AC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 97

Chain	Residue
E	U43
E	C44

---

site_id	AC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 98

Chain	Residue
E	A59

---

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 99

Chain	Residue
E	G1
F	ARG83
M	C21

---

site_id	AC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 97

Chain	Residue
B	A59

---

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 100

Chain	Residue
E	G47
E	G48
E	HOH268

---

site_id	BC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 101

Chain	Residue
E	U37
E	HOH397

---

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 100

Chain	Residue
B	C45
B	HOH281
C	SER48

---

site_id	BC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 103

Chain	Residue
E	G48

---

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 104

Chain	Residue
E	G47
E	G48
E	HOH268

---

site_id	BC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 106

Chain	Residue
E	CA109

---

site_id	BC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 101

Chain	Residue
B	A41

---

site_id	BC8
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 102

Chain	Residue
B	G19

---

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 107

Chain	Residue
E	C44
M	HOH373

---

site_id	CC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 103

Chain	Residue
B	U58

---

site_id	CC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA D 30

Chain	Residue
D	A2312
E	A7

---

site_id	CC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 108

Chain	Residue
E	U56

---

site_id	CC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA P 32

Chain	Residue
P	G13

---

site_id	CC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 109

Chain	Residue
E	G2
E	CA106

---

site_id	CC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 110

Chain	Residue
E	G19

---

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MPD C 102

Chain	Residue
C	PRO76
C	PHE77
C	TYR78
C	HOH427
F	ARG36
F	HOH261

---

site_id	CC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MPD F 102

Chain	Residue
F	SER29
F	ILE33
F	PRO76
F	PHE77
F	TYR78
F	HOH380

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: N-acetylalanine => ECO:0000269|Ref.4, ECO:0007744|PubMed:19413330

Chain	Residue	Details
C	ALA2
F	ALA2

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861

Chain	Residue	Details
C	LYS60
F	LYS60

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