1M5O

Transition State Stabilization by a Catalytic RNA

Functional Information from GO Data

Chain	GOid	namespace	contents
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 93

Chain	Residue
B	U38
B	G39

---

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 93

Chain	Residue
E	A22
E	A59

---

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA E 94

Chain	Residue
E	U38
E	G39
E	U43
E	HOH350

---

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 94

Chain	Residue
B	A41
B	HOH206
B	C40

---

site_id	AC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 95

Chain	Residue
E	U37

---

site_id	AC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 96

Chain	Residue
F	HOH302

---

site_id	AC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 98

Chain	Residue
E	G2

---

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 96

Chain	Residue
B	U43
C	HOH325

---

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 99

Chain	Residue
E	G47
E	G48

---

site_id	BC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 97

Chain	Residue
B	C35

---

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 98

Chain	Residue
B	G21
B	A59
B	HOH393

---

site_id	BC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 99

Chain	Residue
B	G1
B	HOH283

---

site_id	BC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA C 102

Chain	Residue
B	C45
B	HOH262
C	SER46
C	ARG47
C	HOH264

---

site_id	BC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA A 22

Chain	Residue
A	HOH256
E	G1

---

site_id	BC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA F 101

Chain	Residue
E	C35
F	LYS96

---

site_id	BC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 100

Chain	Residue
B	G83
B	U84

---

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 101

Chain	Residue
B	A28
B	C29

---

site_id	BC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA C 103

Chain	Residue
C	HOH217

---

site_id	CC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA F 102

Chain	Residue
F	HOH243

---

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 102

Chain	Residue
B	A22
B	A59
B	U60

---

site_id	CC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 101

Chain	Residue
E	A31

---

site_id	CC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 102

Chain	Residue
E	A59

---

site_id	CC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 103

Chain	Residue
E	C44

---

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 104

Chain	Residue
C	HOH347
E	G2
E	A3

---

site_id	CC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 103

Chain	Residue
B	G2
B	A3

---

site_id	CC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 105

Chain	Residue
E	U37
E	U38

---

site_id	CC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 104

Chain	Residue
B	G11

---

site_id	DC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 105

Chain	Residue
B	U43
B	C44

---

site_id	DC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA C 104

Chain	Residue
C	LYS23
C	ARG47
C	HOH358

---

site_id	DC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA D 36

Chain	Residue
D	AVC12
E	A7

---

site_id	DC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 106

Chain	Residue
A	AVC12
B	G8

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: N-acetylalanine => ECO:0000269|Ref.4, ECO:0007744|PubMed:19413330

Chain	Residue	Details
C	ALA2
F	ALA2

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861

Chain	Residue	Details
C	LYS60
F	LYS60

---