1M5K

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Replaces:  1HP6

Functional Information from GO Data

Chain	GOid	namespace	contents
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 93

Chain	Residue
B	A22
B	A59

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site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 93

Chain	Residue
E	A22
E	A59

---

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA D 22

Chain	Residue
B	GTP1
D	C21

---

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA A 22

Chain	Residue
A	C21
E	GTP1

---

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 94

Chain	Residue
E	G39
E	U43
E	U38

---

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 95

Chain	Residue
B	U38
B	G39
B	U43

---

site_id	AC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 96

Chain	Residue
E	A59

---

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 96

Chain	Residue
B	A59
B	HOH240

---

site_id	AC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 97

Chain	Residue
E	A28

---

site_id	BC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 98

Chain	Residue
B	U53

---

site_id	BC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 98

Chain	Residue
E	G19
E	G21

---

site_id	BC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 99

Chain	Residue
B	GTP1

---

site_id	BC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 99

Chain	Residue
E	A28

---

site_id	BC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA E 100

Chain	Residue
E	U58

---

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA B 101

Chain	Residue
B	C35
B	A36
C	LYS96

---

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 101

Chain	Residue
E	G47
E	G48
E	CA102

---

site_id	BC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA E 102

Chain	Residue
E	G48
E	U49
E	CA101

---

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 104

Chain	Residue
E	U37
E	HOH247

---

site_id	CC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 104

Chain	Residue
B	G6
B	A7

---

site_id	CC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA F 101

Chain	Residue
E	HOH251

---

site_id	CC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA E 105

Chain	Residue
E	A15
E	C16

---

site_id	CC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 105

Chain	Residue
B	G48

---

site_id	CC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA B 106

Chain	Residue
B	C82

---

site_id	CC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CA B 107

Chain	Residue
B	G19
B	HOH298

---

site_id	CC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL F 103

Chain	Residue
F	LYS23
F	LYS27
F	LEU44
F	VAL45

---

site_id	CC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL F 104

Chain	Residue
F	LYS23
F	ARG47
F	HOH285

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: N-acetylalanine => ECO:0000269|Ref.4, ECO:0007744|PubMed:19413330

Chain	Residue	Details
C	ALA2
F	ALA2

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861

Chain	Residue	Details
C	LYS60
F	LYS60

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