1GTF
The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0006353 | biological_process | DNA-templated transcription termination |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0003723 | molecular_function | RNA binding |
| B | 0006353 | biological_process | DNA-templated transcription termination |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0003723 | molecular_function | RNA binding |
| C | 0006353 | biological_process | DNA-templated transcription termination |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0003723 | molecular_function | RNA binding |
| D | 0006353 | biological_process | DNA-templated transcription termination |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0003723 | molecular_function | RNA binding |
| E | 0006353 | biological_process | DNA-templated transcription termination |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| F | 0003723 | molecular_function | RNA binding |
| F | 0006353 | biological_process | DNA-templated transcription termination |
| F | 0006355 | biological_process | regulation of DNA-templated transcription |
| G | 0003723 | molecular_function | RNA binding |
| G | 0006353 | biological_process | DNA-templated transcription termination |
| G | 0006355 | biological_process | regulation of DNA-templated transcription |
| H | 0003723 | molecular_function | RNA binding |
| H | 0006353 | biological_process | DNA-templated transcription termination |
| H | 0006355 | biological_process | regulation of DNA-templated transcription |
| I | 0003723 | molecular_function | RNA binding |
| I | 0006353 | biological_process | DNA-templated transcription termination |
| I | 0006355 | biological_process | regulation of DNA-templated transcription |
| J | 0003723 | molecular_function | RNA binding |
| J | 0006353 | biological_process | DNA-templated transcription termination |
| J | 0006355 | biological_process | regulation of DNA-templated transcription |
| K | 0003723 | molecular_function | RNA binding |
| K | 0006353 | biological_process | DNA-templated transcription termination |
| K | 0006355 | biological_process | regulation of DNA-templated transcription |
| L | 0003723 | molecular_function | RNA binding |
| L | 0006353 | biological_process | DNA-templated transcription termination |
| L | 0006355 | biological_process | regulation of DNA-templated transcription |
| M | 0003723 | molecular_function | RNA binding |
| M | 0006353 | biological_process | DNA-templated transcription termination |
| M | 0006355 | biological_process | regulation of DNA-templated transcription |
| N | 0003723 | molecular_function | RNA binding |
| N | 0006353 | biological_process | DNA-templated transcription termination |
| N | 0006355 | biological_process | regulation of DNA-templated transcription |
| O | 0003723 | molecular_function | RNA binding |
| O | 0006353 | biological_process | DNA-templated transcription termination |
| O | 0006355 | biological_process | regulation of DNA-templated transcription |
| P | 0003723 | molecular_function | RNA binding |
| P | 0006353 | biological_process | DNA-templated transcription termination |
| P | 0006355 | biological_process | regulation of DNA-templated transcription |
| Q | 0003723 | molecular_function | RNA binding |
| Q | 0006353 | biological_process | DNA-templated transcription termination |
| Q | 0006355 | biological_process | regulation of DNA-templated transcription |
| R | 0003723 | molecular_function | RNA binding |
| R | 0006353 | biological_process | DNA-templated transcription termination |
| R | 0006355 | biological_process | regulation of DNA-templated transcription |
| S | 0003723 | molecular_function | RNA binding |
| S | 0006353 | biological_process | DNA-templated transcription termination |
| S | 0006355 | biological_process | regulation of DNA-templated transcription |
| T | 0003723 | molecular_function | RNA binding |
| T | 0006353 | biological_process | DNA-templated transcription termination |
| T | 0006355 | biological_process | regulation of DNA-templated transcription |
| U | 0003723 | molecular_function | RNA binding |
| U | 0006353 | biological_process | DNA-templated transcription termination |
| U | 0006355 | biological_process | regulation of DNA-templated transcription |
| V | 0003723 | molecular_function | RNA binding |
| V | 0006353 | biological_process | DNA-templated transcription termination |
| V | 0006355 | biological_process | regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE TRP A 81 |
| Chain | Residue |
| A | GLY23 |
| K | ASP29 |
| K | THR30 |
| K | SER53 |
| A | GLN47 |
| A | THR49 |
| A | THR52 |
| A | HOH2055 |
| A | HOH2074 |
| K | THR25 |
| K | ARG26 |
| K | GLY27 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP B 81 |
| Chain | Residue |
| A | THR25 |
| A | ARG26 |
| A | GLY27 |
| A | ASP29 |
| A | THR30 |
| A | SER53 |
| B | GLY23 |
| B | GLN47 |
| B | THR49 |
| B | THR52 |
| B | HOH2050 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE TRP C 81 |
| Chain | Residue |
| B | THR25 |
| B | ARG26 |
| B | GLY27 |
| B | ASP29 |
| B | THR30 |
| B | SER53 |
| C | GLY23 |
| C | GLN47 |
| C | THR49 |
| C | THR52 |
| C | HOH2050 |
| C | HOH2069 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP D 81 |
| Chain | Residue |
| C | THR25 |
| C | ARG26 |
| C | GLY27 |
| C | ASP29 |
| C | THR30 |
| C | SER53 |
| D | GLY23 |
| D | GLN47 |
| D | THR49 |
| D | THR52 |
| D | HOH2056 |
| site_id | AC5 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP E 81 |
| Chain | Residue |
| D | THR25 |
| D | ARG26 |
| D | GLY27 |
| D | ASP29 |
| D | THR30 |
| D | SER53 |
| E | GLY23 |
| E | GLN47 |
| E | THR49 |
| E | THR52 |
| E | HOH2063 |
| site_id | AC6 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP F 81 |
| Chain | Residue |
| E | THR25 |
| E | ARG26 |
| E | GLY27 |
| E | ASP29 |
| E | THR30 |
| E | SER53 |
| F | GLY23 |
| F | GLN47 |
| F | THR49 |
| F | THR52 |
| F | HOH2042 |
| site_id | AC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP G 81 |
| Chain | Residue |
| F | THR25 |
| F | ARG26 |
| F | GLY27 |
| F | ASP29 |
| F | THR30 |
| F | SER53 |
| G | GLY23 |
| G | GLN47 |
| G | THR49 |
| G | THR52 |
| G | HOH2047 |
| site_id | AC8 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP H 81 |
| Chain | Residue |
| G | THR25 |
| G | ARG26 |
| G | GLY27 |
| G | ASP29 |
| G | THR30 |
| G | SER53 |
| H | GLY23 |
| H | GLN47 |
| H | THR49 |
| H | THR52 |
| H | HOH2046 |
| site_id | AC9 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP I 81 |
| Chain | Residue |
| I | THR52 |
| I | HOH2047 |
| H | THR25 |
| H | ARG26 |
| H | GLY27 |
| H | ASP29 |
| H | THR30 |
| H | SER53 |
| I | GLY23 |
| I | GLN47 |
| I | THR49 |
| site_id | BC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP J 81 |
| Chain | Residue |
| I | THR25 |
| I | ARG26 |
| I | GLY27 |
| I | ASP29 |
| I | THR30 |
| I | SER53 |
| J | GLY23 |
| J | GLN47 |
| J | THR49 |
| J | THR52 |
| J | HOH2071 |
| site_id | BC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP K 81 |
| Chain | Residue |
| J | THR25 |
| J | ARG26 |
| J | GLY27 |
| J | ASP29 |
| J | THR30 |
| J | SER53 |
| K | GLY23 |
| K | GLN47 |
| K | THR49 |
| K | THR52 |
| K | HOH2057 |
| site_id | BC3 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP L 81 |
| Chain | Residue |
| L | GLY23 |
| L | GLN47 |
| L | THR49 |
| L | THR52 |
| L | HOH2032 |
| M | THR25 |
| M | ARG26 |
| M | GLY27 |
| M | ASP29 |
| M | THR30 |
| M | SER53 |
| site_id | BC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP M 81 |
| Chain | Residue |
| M | GLY23 |
| M | GLN47 |
| M | THR49 |
| M | THR52 |
| M | HOH2034 |
| N | THR25 |
| N | ARG26 |
| N | GLY27 |
| N | ASP29 |
| N | THR30 |
| N | SER53 |
| site_id | BC5 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP N 81 |
| Chain | Residue |
| N | GLY23 |
| N | GLN47 |
| N | THR49 |
| N | THR52 |
| N | HOH2032 |
| O | THR25 |
| O | ARG26 |
| O | GLY27 |
| O | ASP29 |
| O | THR30 |
| O | SER53 |
| site_id | BC6 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP O 81 |
| Chain | Residue |
| O | GLY23 |
| O | GLN47 |
| O | THR49 |
| O | THR52 |
| O | HOH2038 |
| P | THR25 |
| P | ARG26 |
| P | GLY27 |
| P | ASP29 |
| P | THR30 |
| P | SER53 |
| site_id | BC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP P 81 |
| Chain | Residue |
| P | GLY23 |
| P | GLN47 |
| P | THR49 |
| P | THR52 |
| P | HOH2041 |
| Q | THR25 |
| Q | ARG26 |
| Q | GLY27 |
| Q | ASP29 |
| Q | THR30 |
| Q | SER53 |
| site_id | BC8 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE TRP Q 81 |
| Chain | Residue |
| Q | GLY23 |
| Q | ALA46 |
| Q | GLN47 |
| Q | THR49 |
| Q | THR52 |
| Q | HOH2042 |
| R | THR25 |
| R | ARG26 |
| R | GLY27 |
| R | ASP29 |
| R | THR30 |
| R | SER53 |
| site_id | BC9 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE TRP R 81 |
| Chain | Residue |
| R | GLY23 |
| R | ALA46 |
| R | GLN47 |
| R | THR49 |
| R | THR52 |
| R | HOH2056 |
| S | THR25 |
| S | ARG26 |
| S | GLY27 |
| S | ASP29 |
| S | THR30 |
| S | SER53 |
| site_id | CC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP S 81 |
| Chain | Residue |
| S | GLY23 |
| S | GLN47 |
| S | THR49 |
| S | THR52 |
| S | HOH2038 |
| T | THR25 |
| T | ARG26 |
| T | GLY27 |
| T | ASP29 |
| T | THR30 |
| T | SER53 |
| site_id | CC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP T 81 |
| Chain | Residue |
| T | GLY23 |
| T | GLN47 |
| T | THR49 |
| T | THR52 |
| T | HOH2045 |
| U | THR25 |
| U | ARG26 |
| U | GLY27 |
| U | ASP29 |
| U | THR30 |
| U | SER53 |
| site_id | CC3 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP U 81 |
| Chain | Residue |
| U | GLY23 |
| U | GLN47 |
| U | THR49 |
| U | THR52 |
| U | HOH2035 |
| V | THR25 |
| V | ARG26 |
| V | GLY27 |
| V | ASP29 |
| V | THR30 |
| V | SER53 |
| site_id | CC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE TRP V 81 |
| Chain | Residue |
| L | THR25 |
| L | ARG26 |
| L | GLY27 |
| L | ASP29 |
| L | THR30 |
| L | SER53 |
| V | GLY23 |
| V | GLN47 |
| V | THR49 |
| V | THR52 |
| V | HOH2038 |
