Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1GTF

The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0005515	molecular_function	protein binding
A	0006353	biological_process	DNA-templated transcription termination
A	0006355	biological_process	regulation of DNA-templated transcription
A	0042802	molecular_function	identical protein binding
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0006353	biological_process	DNA-templated transcription termination
B	0006355	biological_process	regulation of DNA-templated transcription
B	0042802	molecular_function	identical protein binding
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0006353	biological_process	DNA-templated transcription termination
C	0006355	biological_process	regulation of DNA-templated transcription
C	0042802	molecular_function	identical protein binding
D	0003723	molecular_function	RNA binding
D	0005515	molecular_function	protein binding
D	0006353	biological_process	DNA-templated transcription termination
D	0006355	biological_process	regulation of DNA-templated transcription
D	0042802	molecular_function	identical protein binding
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0006353	biological_process	DNA-templated transcription termination
E	0006355	biological_process	regulation of DNA-templated transcription
E	0042802	molecular_function	identical protein binding
F	0003723	molecular_function	RNA binding
F	0005515	molecular_function	protein binding
F	0006353	biological_process	DNA-templated transcription termination
F	0006355	biological_process	regulation of DNA-templated transcription
F	0042802	molecular_function	identical protein binding
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0006353	biological_process	DNA-templated transcription termination
G	0006355	biological_process	regulation of DNA-templated transcription
G	0042802	molecular_function	identical protein binding
H	0003723	molecular_function	RNA binding
H	0005515	molecular_function	protein binding
H	0006353	biological_process	DNA-templated transcription termination
H	0006355	biological_process	regulation of DNA-templated transcription
H	0042802	molecular_function	identical protein binding
I	0003723	molecular_function	RNA binding
I	0005515	molecular_function	protein binding
I	0006353	biological_process	DNA-templated transcription termination
I	0006355	biological_process	regulation of DNA-templated transcription
I	0042802	molecular_function	identical protein binding
J	0003723	molecular_function	RNA binding
J	0005515	molecular_function	protein binding
J	0006353	biological_process	DNA-templated transcription termination
J	0006355	biological_process	regulation of DNA-templated transcription
J	0042802	molecular_function	identical protein binding
K	0003723	molecular_function	RNA binding
K	0005515	molecular_function	protein binding
K	0006353	biological_process	DNA-templated transcription termination
K	0006355	biological_process	regulation of DNA-templated transcription
K	0042802	molecular_function	identical protein binding
L	0003723	molecular_function	RNA binding
L	0005515	molecular_function	protein binding
L	0006353	biological_process	DNA-templated transcription termination
L	0006355	biological_process	regulation of DNA-templated transcription
L	0042802	molecular_function	identical protein binding
M	0003723	molecular_function	RNA binding
M	0005515	molecular_function	protein binding
M	0006353	biological_process	DNA-templated transcription termination
M	0006355	biological_process	regulation of DNA-templated transcription
M	0042802	molecular_function	identical protein binding
N	0003723	molecular_function	RNA binding
N	0005515	molecular_function	protein binding
N	0006353	biological_process	DNA-templated transcription termination
N	0006355	biological_process	regulation of DNA-templated transcription
N	0042802	molecular_function	identical protein binding
O	0003723	molecular_function	RNA binding
O	0005515	molecular_function	protein binding
O	0006353	biological_process	DNA-templated transcription termination
O	0006355	biological_process	regulation of DNA-templated transcription
O	0042802	molecular_function	identical protein binding
P	0003723	molecular_function	RNA binding
P	0005515	molecular_function	protein binding
P	0006353	biological_process	DNA-templated transcription termination
P	0006355	biological_process	regulation of DNA-templated transcription
P	0042802	molecular_function	identical protein binding
Q	0003723	molecular_function	RNA binding
Q	0005515	molecular_function	protein binding
Q	0006353	biological_process	DNA-templated transcription termination
Q	0006355	biological_process	regulation of DNA-templated transcription
Q	0042802	molecular_function	identical protein binding
R	0003723	molecular_function	RNA binding
R	0005515	molecular_function	protein binding
R	0006353	biological_process	DNA-templated transcription termination
R	0006355	biological_process	regulation of DNA-templated transcription
R	0042802	molecular_function	identical protein binding
S	0003723	molecular_function	RNA binding
S	0005515	molecular_function	protein binding
S	0006353	biological_process	DNA-templated transcription termination
S	0006355	biological_process	regulation of DNA-templated transcription
S	0042802	molecular_function	identical protein binding
T	0003723	molecular_function	RNA binding
T	0005515	molecular_function	protein binding
T	0006353	biological_process	DNA-templated transcription termination
T	0006355	biological_process	regulation of DNA-templated transcription
T	0042802	molecular_function	identical protein binding
U	0003723	molecular_function	RNA binding
U	0005515	molecular_function	protein binding
U	0006353	biological_process	DNA-templated transcription termination
U	0006355	biological_process	regulation of DNA-templated transcription
U	0042802	molecular_function	identical protein binding
V	0003723	molecular_function	RNA binding
V	0005515	molecular_function	protein binding
V	0006353	biological_process	DNA-templated transcription termination
V	0006355	biological_process	regulation of DNA-templated transcription
V	0042802	molecular_function	identical protein binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TRP A 81

Chain	Residue
A	GLY23
K	ASP29
K	THR30
K	SER53
A	GLN47
A	THR49
A	THR52
A	HOH2055
A	HOH2074
K	THR25
K	ARG26
K	GLY27

site_id	AC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP B 81

Chain	Residue
A	THR25
A	ARG26
A	GLY27
A	ASP29
A	THR30
A	SER53
B	GLY23
B	GLN47
B	THR49
B	THR52
B	HOH2050

site_id	AC3
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TRP C 81

Chain	Residue
B	THR25
B	ARG26
B	GLY27
B	ASP29
B	THR30
B	SER53
C	GLY23
C	GLN47
C	THR49
C	THR52
C	HOH2050
C	HOH2069

site_id	AC4
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP D 81

Chain	Residue
C	THR25
C	ARG26
C	GLY27
C	ASP29
C	THR30
C	SER53
D	GLY23
D	GLN47
D	THR49
D	THR52
D	HOH2056

site_id	AC5
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP E 81

Chain	Residue
D	THR25
D	ARG26
D	GLY27
D	ASP29
D	THR30
D	SER53
E	GLY23
E	GLN47
E	THR49
E	THR52
E	HOH2063

site_id	AC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP F 81

Chain	Residue
E	THR25
E	ARG26
E	GLY27
E	ASP29
E	THR30
E	SER53
F	GLY23
F	GLN47
F	THR49
F	THR52
F	HOH2042

site_id	AC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP G 81

Chain	Residue
F	THR25
F	ARG26
F	GLY27
F	ASP29
F	THR30
F	SER53
G	GLY23
G	GLN47
G	THR49
G	THR52
G	HOH2047

site_id	AC8
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP H 81

Chain	Residue
G	THR25
G	ARG26
G	GLY27
G	ASP29
G	THR30
G	SER53
H	GLY23
H	GLN47
H	THR49
H	THR52
H	HOH2046

site_id	AC9
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP I 81

Chain	Residue
I	THR52
I	HOH2047
H	THR25
H	ARG26
H	GLY27
H	ASP29
H	THR30
H	SER53
I	GLY23
I	GLN47
I	THR49

site_id	BC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP J 81

Chain	Residue
I	THR25
I	ARG26
I	GLY27
I	ASP29
I	THR30
I	SER53
J	GLY23
J	GLN47
J	THR49
J	THR52
J	HOH2071

site_id	BC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP K 81

Chain	Residue
J	THR25
J	ARG26
J	GLY27
J	ASP29
J	THR30
J	SER53
K	GLY23
K	GLN47
K	THR49
K	THR52
K	HOH2057

site_id	BC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP L 81

Chain	Residue
L	GLY23
L	GLN47
L	THR49
L	THR52
L	HOH2032
M	THR25
M	ARG26
M	GLY27
M	ASP29
M	THR30
M	SER53

site_id	BC4
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP M 81

Chain	Residue
M	GLY23
M	GLN47
M	THR49
M	THR52
M	HOH2034
N	THR25
N	ARG26
N	GLY27
N	ASP29
N	THR30
N	SER53

site_id	BC5
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP N 81

Chain	Residue
N	GLY23
N	GLN47
N	THR49
N	THR52
N	HOH2032
O	THR25
O	ARG26
O	GLY27
O	ASP29
O	THR30
O	SER53

site_id	BC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP O 81

Chain	Residue
O	GLY23
O	GLN47
O	THR49
O	THR52
O	HOH2038
P	THR25
P	ARG26
P	GLY27
P	ASP29
P	THR30
P	SER53

site_id	BC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP P 81

Chain	Residue
P	GLY23
P	GLN47
P	THR49
P	THR52
P	HOH2041
Q	THR25
Q	ARG26
Q	GLY27
Q	ASP29
Q	THR30
Q	SER53

site_id	BC8
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TRP Q 81

Chain	Residue
Q	GLY23
Q	ALA46
Q	GLN47
Q	THR49
Q	THR52
Q	HOH2042
R	THR25
R	ARG26
R	GLY27
R	ASP29
R	THR30
R	SER53

site_id	BC9
Number of Residues	12
Details	BINDING SITE FOR RESIDUE TRP R 81

Chain	Residue
R	GLY23
R	ALA46
R	GLN47
R	THR49
R	THR52
R	HOH2056
S	THR25
S	ARG26
S	GLY27
S	ASP29
S	THR30
S	SER53

site_id	CC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP S 81

Chain	Residue
S	GLY23
S	GLN47
S	THR49
S	THR52
S	HOH2038
T	THR25
T	ARG26
T	GLY27
T	ASP29
T	THR30
T	SER53

site_id	CC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP T 81

Chain	Residue
T	GLY23
T	GLN47
T	THR49
T	THR52
T	HOH2045
U	THR25
U	ARG26
U	GLY27
U	ASP29
U	THR30
U	SER53

site_id	CC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP U 81

Chain	Residue
U	GLY23
U	GLN47
U	THR49
U	THR52
U	HOH2035
V	THR25
V	ARG26
V	GLY27
V	ASP29
V	THR30
V	SER53

site_id	CC4
Number of Residues	11
Details	BINDING SITE FOR RESIDUE TRP V 81

Chain	Residue
L	THR25
L	ARG26
L	GLY27
L	ASP29
L	THR30
L	SER53
V	GLY23
V	GLN47
V	THR49
V	THR52
V	HOH2038

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)